Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP19_F_H20
(965 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0080 + 587674-588510 31 1.0
04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943... 31 1.4
07_01_0674 + 5047503-5047646,5047808-5047901,5048743-5048828,504... 28 2.9
02_05_0686 - 30900748-30902167,30903442-30904742 29 5.5
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 29 7.3
08_01_0375 - 3307206-3307316,3307870-3307965,3308061-3308132,330... 29 7.3
08_02_1410 - 26876243-26876497,26877129-26877239,26877240-268773... 28 9.7
>07_01_0080 + 587674-588510
Length = 278
Score = 31.5 bits (68), Expect = 1.0
Identities = 12/28 (42%), Positives = 12/28 (42%)
Frame = -3
Query: 783 PPPPPPXXGXGXXXXPPXPXXXXXXXPP 700
PPPPPP G PP P PP
Sbjct: 92 PPPPPPPPSSGSPPPPPPPPPPPPPPPP 119
Score = 30.7 bits (66), Expect = 1.8
Identities = 12/28 (42%), Positives = 12/28 (42%)
Frame = -3
Query: 783 PPPPPPXXGXGXXXXPPXPXXXXXXXPP 700
PPPPPP G PP P PP
Sbjct: 94 PPPPPPSSGSPPPPPPPPPPPPPPPPPP 121
Score = 29.1 bits (62), Expect = 5.5
Identities = 11/28 (39%), Positives = 11/28 (39%)
Frame = -3
Query: 783 PPPPPPXXGXGXXXXPPXPXXXXXXXPP 700
PPPPPP PP P PP
Sbjct: 93 PPPPPPPSSGSPPPPPPPPPPPPPPPPP 120
Score = 28.3 bits (60), Expect = 9.7
Identities = 11/28 (39%), Positives = 11/28 (39%)
Frame = -3
Query: 783 PPPPPPXXGXGXXXXPPXPXXXXXXXPP 700
PPPPPP PP P PP
Sbjct: 91 PPPPPPPPPSSGSPPPPPPPPPPPPPPP 118
>04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,
9435445-9435526,9435610-9435660,9435749-9435829,
9435965-9436006,9436117-9436215,9438130-9438201,
9438557-9438680,9438850-9439723,9440274-9440456,
9440941-9442741,9442825-9443049,9443117-9443814,
9444519-9444591
Length = 1541
Score = 31.1 bits (67), Expect = 1.4
Identities = 12/27 (44%), Positives = 12/27 (44%)
Frame = -3
Query: 780 PPPPPXXGXGXXXXPPXPXXXXXXXPP 700
PPPPP G G PP P PP
Sbjct: 1149 PPPPPVGGLGGPPAPPPPAGFRGGTPP 1175
Score = 31.1 bits (67), Expect = 1.4
Identities = 23/80 (28%), Positives = 24/80 (30%)
Frame = +1
Query: 277 GXXGXPPPPF*XGGFFXXXXXXXQXXFXXGGXXXPPPPPKKXXGXXXPFFFFXXXKKXAP 456
G G PP P GF GG PPPPP+ G P P
Sbjct: 1155 GGLGGPPAPPPPAGFRGGTPPPNAH----GGVAPPPPPPRGHGGVGGPPTPPGAPAPPMP 1210
Query: 457 PXXXXXPXXXXGGXXXXXPP 516
P P GG PP
Sbjct: 1211 PGVPGGPPPPPGGRGLPAPP 1230
Score = 28.3 bits (60), Expect = 9.7
Identities = 11/26 (42%), Positives = 11/26 (42%)
Frame = -3
Query: 777 PPPPXXGXGXXXXPPXPXXXXXXXPP 700
PPPP G G PP P PP
Sbjct: 1099 PPPPSIGAGAPPPPPPPGGITGVPPP 1124
Score = 28.3 bits (60), Expect = 9.7
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = -3
Query: 780 PPPPPXXGXGXXXXPPXP 727
PPPPP G G PP P
Sbjct: 1122 PPPPPIGGLGGHQAPPAP 1139
Score = 28.3 bits (60), Expect = 9.7
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = -3
Query: 780 PPPPPXXGXGXXXXPPXP 727
PPPPP G G PP P
Sbjct: 1184 PPPPPPRGHGGVGGPPTP 1201
>07_01_0674 +
5047503-5047646,5047808-5047901,5048743-5048828,
5049380-5049429,5049517-5049586,5049668-5049749,
5049867-5050267,5050414-5050941,5051823-5052044
Length = 558
Score = 27.9 bits (59), Expect(2) = 2.9
Identities = 16/49 (32%), Positives = 16/49 (32%)
Frame = +1
Query: 379 PPPPPKKXXGXXXPFFFFXXXKKXAPPXXXXXPXXXXGGXXXXXPPPPP 525
PPPPPK P PP P G PPPPP
Sbjct: 233 PPPPPKPANIAGAPGL---PLPPPPPPPPGPPPREIVPGQTLLPPPPPP 278
Score = 20.6 bits (41), Expect(2) = 2.9
Identities = 6/6 (100%), Positives = 6/6 (100%)
Frame = +1
Query: 511 PPPPPG 528
PPPPPG
Sbjct: 315 PPPPPG 320
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 29.1 bits (62), Expect = 5.5
Identities = 11/28 (39%), Positives = 11/28 (39%)
Frame = -3
Query: 783 PPPPPPXXGXGXXXXPPXPXXXXXXXPP 700
PPPPPP PP P PP
Sbjct: 314 PPPPPPKPAAAAPPPPPPPKAAPPPPPP 341
Score = 28.3 bits (60), Expect = 9.7
Identities = 11/28 (39%), Positives = 11/28 (39%)
Frame = -3
Query: 783 PPPPPPXXGXGXXXXPPXPXXXXXXXPP 700
PPPPPP PP P PP
Sbjct: 313 PPPPPPPKPAAAAPPPPPPPKAAPPPPP 340
>10_01_0100 +
1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 28.7 bits (61), Expect = 7.3
Identities = 15/49 (30%), Positives = 15/49 (30%)
Frame = +1
Query: 379 PPPPPKKXXGXXXPFFFFXXXKKXAPPXXXXXPXXXXGGXXXXXPPPPP 525
PPPPP P F PP P PPPPP
Sbjct: 546 PPPPPPPPPSGNKPAF--SPPPPPPPPPPPPLPQSNYASSQPPPPPPPP 592
>08_01_0375 -
3307206-3307316,3307870-3307965,3308061-3308132,
3308247-3308315,3308427-3308513,3308753-3308858,
3309118-3309237,3309327-3309406,3309497-3309878,
3310746-3310814,3311460-3312202
Length = 644
Score = 28.7 bits (61), Expect = 7.3
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = -3
Query: 783 PPPPPPXXGXGXXXXPPXP 727
PPPPPP G PP P
Sbjct: 92 PPPPPPPYGVNSSQPPPPP 110
>08_02_1410 -
26876243-26876497,26877129-26877239,26877240-26877324,
26877620-26877672,26878318-26878440,26878514-26878597,
26878708-26878773,26879512-26879584,26879854-26879888,
26879970-26880212
Length = 375
Score = 28.3 bits (60), Expect = 9.7
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = +2
Query: 728 GXGGXXXXPXPXXGGGGGG 784
G GG P P GGGGGG
Sbjct: 20 GGGGEGLNPNPSGGGGGGG 38
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,885,262
Number of Sequences: 37544
Number of extensions: 424736
Number of successful extensions: 4235
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1620
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3715
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2799822860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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