Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_H20
         (965 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70312-3|CAA94385.1|  172|Caenorhabditis elegans Hypothetical pr...    31   1.2  
Z68338-7|CAA92756.2|  866|Caenorhabditis elegans Hypothetical pr...    31   1.2  
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def...    31   1.6  
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def...    31   1.6  
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.    31   1.6  
Z48367-5|CAE54886.1|  993|Caenorhabditis elegans Hypothetical pr...    30   2.8  
Z48367-4|CAA88324.1| 1110|Caenorhabditis elegans Hypothetical pr...    30   2.8  
Z81088-5|CAB03133.1|  215|Caenorhabditis elegans Hypothetical pr...    29   6.5  
Z81088-4|CAB03125.1|  105|Caenorhabditis elegans Hypothetical pr...    29   6.5  
X74838-1|CAA52832.1|  231|Caenorhabditis elegans cuticlin 2 prot...    29   6.5  
AL032652-4|CAB63398.1|  486|Caenorhabditis elegans Hypothetical ...    29   6.5  
Z78013-8|CAN99686.1|  373|Caenorhabditis elegans Hypothetical pr...    28   8.7  
Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical pr...    28   8.7  
U40799-6|AAA81484.2|  210|Caenorhabditis elegans Ground-like (gr...    28   8.7  
U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA bi...    28   8.7  

>Z70312-3|CAA94385.1|  172|Caenorhabditis elegans Hypothetical
           protein ZC168.5 protein.
          Length = 172

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 11/19 (57%), Positives = 11/19 (57%)
 Frame = -3

Query: 783 PPPPPPXXGXGXXXXPPXP 727
           PPPPPP  G G    PP P
Sbjct: 40  PPPPPPPCGGGYEAPPPPP 58


>Z68338-7|CAA92756.2|  866|Caenorhabditis elegans Hypothetical
           protein T24B8.4 protein.
          Length = 866

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 11/19 (57%), Positives = 11/19 (57%)
 Frame = -3

Query: 783 PPPPPPXXGXGXXXXPPXP 727
           PPPPPP  G G    PP P
Sbjct: 114 PPPPPPPSGLGVAPQPPRP 132


>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoformb protein.
          Length = 1437

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 12/28 (42%), Positives = 12/28 (42%)
 Frame = -3

Query: 783 PPPPPPXXGXGXXXXPPXPXXXXXXXPP 700
           PPPPPP  G      PP P       PP
Sbjct: 759 PPPPPPPGGCPPPPPPPPPGGFKGGPPP 786



 Score = 30.3 bits (65), Expect = 2.1
 Identities = 12/28 (42%), Positives = 12/28 (42%)
 Frame = -3

Query: 783 PPPPPPXXGXGXXXXPPXPXXXXXXXPP 700
           PPPPPP  G      PP P       PP
Sbjct: 758 PPPPPPPPGGCPPPPPPPPPGGFKGGPP 785



 Score = 28.3 bits (60), Expect = 8.7
 Identities = 14/36 (38%), Positives = 14/36 (38%)
 Frame = +1

Query: 286 GXPPPPF*XGGFFXXXXXXXQXXFXXGGXXXPPPPP 393
           G PPPP   GG               GG   PPPPP
Sbjct: 740 GGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPP 775


>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoforma protein.
          Length = 1435

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 12/28 (42%), Positives = 12/28 (42%)
 Frame = -3

Query: 783 PPPPPPXXGXGXXXXPPXPXXXXXXXPP 700
           PPPPPP  G      PP P       PP
Sbjct: 759 PPPPPPPGGCPPPPPPPPPGGFKGGPPP 786



 Score = 30.3 bits (65), Expect = 2.1
 Identities = 12/28 (42%), Positives = 12/28 (42%)
 Frame = -3

Query: 783 PPPPPPXXGXGXXXXPPXPXXXXXXXPP 700
           PPPPPP  G      PP P       PP
Sbjct: 758 PPPPPPPPGGCPPPPPPPPPGGFKGGPP 785



 Score = 28.3 bits (60), Expect = 8.7
 Identities = 14/36 (38%), Positives = 14/36 (38%)
 Frame = +1

Query: 286 GXPPPPF*XGGFFXXXXXXXQXXFXXGGXXXPPPPP 393
           G PPPP   GG               GG   PPPPP
Sbjct: 740 GGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPP 775


>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
          Length = 1018

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 12/28 (42%), Positives = 12/28 (42%)
 Frame = -3

Query: 783 PPPPPPXXGXGXXXXPPXPXXXXXXXPP 700
           PPPPPP  G      PP P       PP
Sbjct: 342 PPPPPPPGGCPPPPPPPPPGGFKGGPPP 369



 Score = 30.3 bits (65), Expect = 2.1
 Identities = 12/28 (42%), Positives = 12/28 (42%)
 Frame = -3

Query: 783 PPPPPPXXGXGXXXXPPXPXXXXXXXPP 700
           PPPPPP  G      PP P       PP
Sbjct: 341 PPPPPPPPGGCPPPPPPPPPGGFKGGPP 368



 Score = 28.3 bits (60), Expect = 8.7
 Identities = 14/36 (38%), Positives = 14/36 (38%)
 Frame = +1

Query: 286 GXPPPPF*XGGFFXXXXXXXQXXFXXGGXXXPPPPP 393
           G PPPP   GG               GG   PPPPP
Sbjct: 323 GGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPP 358


>Z48367-5|CAE54886.1|  993|Caenorhabditis elegans Hypothetical
           protein C33B4.3b protein.
          Length = 993

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 15/50 (30%), Positives = 15/50 (30%)
 Frame = +1

Query: 379 PPPPPKKXXGXXXPFFFFXXXKKXAPPXXXXXPXXXXGGXXXXXPPPPPG 528
           PPPPP           F        PP     P    G      PPPP G
Sbjct: 769 PPPPPPHCEPTMVHVEFTPPSTSSVPPPPPPLPPISSGAPPPPPPPPPGG 818


>Z48367-4|CAA88324.1| 1110|Caenorhabditis elegans Hypothetical
           protein C33B4.3a protein.
          Length = 1110

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 15/50 (30%), Positives = 15/50 (30%)
 Frame = +1

Query: 379 PPPPPKKXXGXXXPFFFFXXXKKXAPPXXXXXPXXXXGGXXXXXPPPPPG 528
           PPPPP           F        PP     P    G      PPPP G
Sbjct: 769 PPPPPPHCEPTMVHVEFTPPSTSSVPPPPPPLPPISSGAPPPPPPPPPGG 818


>Z81088-5|CAB03133.1|  215|Caenorhabditis elegans Hypothetical
           protein F53F1.5 protein.
          Length = 215

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = -3

Query: 783 PPPPPPXXGXGXXXXPP 733
           PPPPPP  G G    PP
Sbjct: 31  PPPPPPPCGCGAPALPP 47


>Z81088-4|CAB03125.1|  105|Caenorhabditis elegans Hypothetical
           protein F53F1.4 protein.
          Length = 105

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = -3

Query: 783 PPPPPPXXGXGXXXXPP 733
           PPPPPP  G G    PP
Sbjct: 31  PPPPPPPCGCGGPSLPP 47


>X74838-1|CAA52832.1|  231|Caenorhabditis elegans cuticlin 2
           protein.
          Length = 231

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = -3

Query: 783 PPPPPPXXGXGXXXXPP 733
           PPPPPP  G G    PP
Sbjct: 31  PPPPPPPCGCGAPALPP 47


>AL032652-4|CAB63398.1|  486|Caenorhabditis elegans Hypothetical
           protein Y63D3A.5 protein.
          Length = 486

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 16/50 (32%), Positives = 16/50 (32%)
 Frame = +1

Query: 379 PPPPPKKXXGXXXPFFFFXXXKKXAPPXXXXXPXXXXGGXXXXXPPPPPG 528
           PPPP     G   P          APP          GG     PPPP G
Sbjct: 367 PPPPVSSAPGNFAPPPQSGPPGAFAPPPSAFGAPQGPGGPGGYGPPPPGG 416


>Z78013-8|CAN99686.1|  373|Caenorhabditis elegans Hypothetical
           protein F15B9.10 protein.
          Length = 373

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 11/19 (57%), Positives = 11/19 (57%)
 Frame = +2

Query: 728 GXGGXXXXPXPXXGGGGGG 784
           G GG    P P  GGGGGG
Sbjct: 266 GGGGGYPQPPPQQGGGGGG 284


>Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical
           protein C08B11.5 protein.
          Length = 388

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 17/57 (29%), Positives = 19/57 (33%), Gaps = 3/57 (5%)
 Frame = +1

Query: 364 GGXXXPPPPPKKXXGXXXPF---FFFXXXKKXAPPXXXXXPXXXXGGXXXXXPPPPP 525
           GG   PPPP  +  G   P     +        PP     P     G     PPPPP
Sbjct: 331 GGMPPPPPPGMRYPGGMPPPPPPRYPSAGPGMYPPPPPSRPPAPPSGHGMIPPPPPP 387


>U40799-6|AAA81484.2|  210|Caenorhabditis elegans Ground-like (grd
           related) protein 4 protein.
          Length = 210

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 11/28 (39%), Positives = 11/28 (39%)
 Frame = -3

Query: 783 PPPPPPXXGXGXXXXPPXPXXXXXXXPP 700
           PPPPPP         PP P       PP
Sbjct: 31  PPPPPPMCAPPPLPCPPPPICPPQFCPP 58


>U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA
           binding protein protein.
          Length = 398

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 17/57 (29%), Positives = 19/57 (33%), Gaps = 3/57 (5%)
 Frame = +1

Query: 364 GGXXXPPPPPKKXXGXXXPF---FFFXXXKKXAPPXXXXXPXXXXGGXXXXXPPPPP 525
           GG   PPPP  +  G   P     +        PP     P     G     PPPPP
Sbjct: 341 GGMPPPPPPGMRYPGGMPPPPPPRYPSAGPGMYPPPPPSRPPAPPSGHGMIPPPPPP 397


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,428,785
Number of Sequences: 27780
Number of extensions: 237039
Number of successful extensions: 1796
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 572
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1475
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2500474882
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)