Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP19_F_H19
(1091 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 46 9e-06
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 41 3e-04
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 36 0.008
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 28 0.052
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 33 0.070
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S... 26 0.12
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 30 0.49
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces... 24 0.97
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 28 2.0
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 28 2.6
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 24 8.2
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 46.0 bits (104), Expect = 9e-06
Identities = 22/54 (40%), Positives = 22/54 (40%)
Frame = +2
Query: 140 PXXXPXPPXXXXGXPPPPPPPXXXGRXKKKXXXXXPPPPPPPXXXXGGGXXXPP 301
P P P G PPPPPPP G PPPPPPP GG P
Sbjct: 748 PIPVPPPAPIMGGPPPPPPPPGVAGAGPP------PPPPPPPAVSAGGSRYYAP 795
Score = 40.7 bits (91), Expect = 3e-04
Identities = 18/48 (37%), Positives = 18/48 (37%)
Frame = +3
Query: 159 PPXXXXXXPPPPPPXXXXVXXKKXXXXXXPPPPPPPXXXGGGXXXPPP 302
PP P P P V PPPPPPP G G PPP
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPP 780
Score = 39.9 bits (89), Expect = 6e-04
Identities = 22/58 (37%), Positives = 23/58 (39%)
Frame = +2
Query: 131 KTPPXXXPXPPXXXXGXPPPPPPPXXXGRXKKKXXXXXPPPPPPPXXXXGGGXXXPPP 304
K+PP P PP P P P P PPPPPPP G G PPP
Sbjct: 730 KSPP---PPPPAVIVPTPAPAPIPVPP----PAPIMGGPPPPPPPPGVAGAGPPPPPP 780
Score = 37.9 bits (84), Expect = 0.002
Identities = 19/50 (38%), Positives = 19/50 (38%)
Frame = +3
Query: 135 PPXXXXPXPPXXXXXXPPPPPPXXXXVXXKKXXXXXXPPPPPPPXXXGGG 284
P P PP PPPPP V PPPPPPP GG
Sbjct: 744 PAPAPIPVPPPAPIMGGPPPPPPPPGV----AGAGPPPPPPPPPAVSAGG 789
Score = 35.9 bits (79), Expect = 0.010
Identities = 15/43 (34%), Positives = 16/43 (37%)
Frame = +2
Query: 137 PPXXXPXPPXXXXGXPPPPPPPXXXGRXKKKXXXXXPPPPPPP 265
PP P P G PPPPPPP + P P P
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAPQAEPEP 803
Score = 32.3 bits (70), Expect = 0.12
Identities = 17/46 (36%), Positives = 17/46 (36%)
Frame = +3
Query: 183 PPPPPPXXXXVXXKKXXXXXXPPPPPPPXXXGGGXXXPPPXXXXXG 320
PPPPPP V P PPP P G PPP G
Sbjct: 732 PPPPPPA---VIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAG 774
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 41.1 bits (92), Expect = 3e-04
Identities = 19/45 (42%), Positives = 19/45 (42%), Gaps = 5/45 (11%)
Frame = +2
Query: 182 PPPPPPPXXXGRXKK-----KXXXXXPPPPPPPXXXXGGGXXXPP 301
PPPPPPP R K PPPPPPP G PP
Sbjct: 311 PPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPP 355
Score = 38.3 bits (85), Expect = 0.002
Identities = 18/42 (42%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
Frame = +1
Query: 181 PPPPPPPXXX--GSXXKKXXXXXXPPPPPPXXXXGGGXXXPP 300
PPPPPPP GS PPPPPP G PP
Sbjct: 337 PPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPP 378
Score = 31.1 bits (67), Expect = 0.28
Identities = 13/36 (36%), Positives = 13/36 (36%)
Frame = +2
Query: 158 PPXXXXGXPPPPPPPXXXGRXKKKXXXXXPPPPPPP 265
P PP PPP PPPPPPP
Sbjct: 282 PAINSTSKPPLPPPSSRVSAAALAANKKRPPPPPPP 317
Score = 28.7 bits (61), Expect = 1.5
Identities = 15/52 (28%), Positives = 17/52 (32%), Gaps = 5/52 (9%)
Frame = +1
Query: 160 PPXXXGXPPPPPPPXXXGSXXK-----KXXXXXXPPPPPPXXXXGGGXXXPP 300
PP PPPPPP + + PP PPP PP
Sbjct: 354 PPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPP 405
Score = 26.6 bits (56), Expect = 6.1
Identities = 12/39 (30%), Positives = 14/39 (35%)
Frame = +2
Query: 185 PPPPPPXXXGRXKKKXXXXXPPPPPPPXXXXGGGXXXPP 301
PP PP R ++ P PPP G PP
Sbjct: 230 PPIPPSIPSSRPPERVPSLSAPAPPPIPPPSNGTVSSPP 268
Score = 26.6 bits (56), Expect = 6.1
Identities = 12/39 (30%), Positives = 13/39 (33%)
Frame = +1
Query: 187 PPPPPXXXGSXXKKXXXXXXPPPPPPXXXXGGGXXXPPP 303
PP PP S + P PPP G PP
Sbjct: 230 PPIPPSIPSSRPPERVPSLSAPAPPPIPPPSNGTVSSPP 268
Score = 26.2 bits (55), Expect = 8.0
Identities = 12/39 (30%), Positives = 14/39 (35%)
Frame = +3
Query: 183 PPPPPPXXXXVXXKKXXXXXXPPPPPPPXXXGGGXXXPP 299
PP PP ++ P PPP P G PP
Sbjct: 230 PPIPPSIPSSRPPERVPSLSAPAPPPIPPPSNGTVSSPP 268
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 36.3 bits (80), Expect = 0.008
Identities = 23/59 (38%), Positives = 24/59 (40%), Gaps = 2/59 (3%)
Frame = -3
Query: 303 GGGXXXPPPXXXXGGGGGGGXXXXXFFXXRPXXXGGGGGG--GXPXXXXGGXGXXXGGV 133
GGG PPP G GG GG GGG GG G P GG G GG+
Sbjct: 194 GGGSGGPPP-GPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGGGL 251
Score = 32.3 bits (70), Expect = 0.12
Identities = 19/56 (33%), Positives = 19/56 (33%)
Frame = -2
Query: 301 GGGXXXPPPXXXGGGGGGGXXXXXFFFXXTXXXXGGGGGGXXXXXXGGXGXXXXGG 134
GGG PPP G GG GG GG GG G G GG
Sbjct: 194 GGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGG 249
Score = 30.3 bits (65), Expect = 0.49
Identities = 18/44 (40%), Positives = 18/44 (40%), Gaps = 2/44 (4%)
Frame = -3
Query: 264 GGGGGGGXXXXXFFXXRPXXXGG--GGGGGXPXXXXGGXGXXXG 139
GGG GG F P GG GG GG P GG G G
Sbjct: 227 GGGPGGFEGGPGGFGGGPGGFGGGLGGFGGGPGGFGGGPGGHGG 270
Score = 28.7 bits (61), Expect = 1.5
Identities = 16/37 (43%), Positives = 16/37 (43%), Gaps = 2/37 (5%)
Frame = -1
Query: 263 GGGGGGXXXXXXFFXXDPXXXGG--GGGGGXPXXXGG 159
GGG GG F P GG GG GG P GG
Sbjct: 227 GGGPGGFEGGPGGFGGGPGGFGGGLGGFGGGPGGFGG 263
Score = 26.2 bits (55), Expect = 8.0
Identities = 14/31 (45%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Frame = -1
Query: 263 GGGGGGXXXXXXFFXXDPXXXGGG-GGGGXP 174
GGG GG F P GGG GG G P
Sbjct: 241 GGGPGGFGGGLGGFGGGPGGFGGGPGGHGGP 271
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 28.3 bits (60), Expect(2) = 0.052
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = +2
Query: 245 PPPPPPPXXXXGGGXXXPP 301
PPPPPPP GG P
Sbjct: 947 PPPPPPPLVSAAGGKFVSP 965
Score = 25.0 bits (52), Expect(2) = 2.5
Identities = 9/20 (45%), Positives = 9/20 (45%)
Frame = +2
Query: 245 PPPPPPPXXXXGGGXXXPPP 304
PPPPPPP G P
Sbjct: 946 PPPPPPPPLVSAAGGKFVSP 965
Score = 24.2 bits (50), Expect(2) = 3.2
Identities = 8/15 (53%), Positives = 9/15 (60%)
Frame = +1
Query: 181 PPPPPPPXXXGSXXK 225
PPPPPPP + K
Sbjct: 947 PPPPPPPLVSAAGGK 961
Score = 23.8 bits (49), Expect(2) = 0.052
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = +2
Query: 182 PPPPPPP 202
PPPPPPP
Sbjct: 945 PPPPPPP 951
Score = 21.4 bits (43), Expect(2) = 3.2
Identities = 7/12 (58%), Positives = 7/12 (58%)
Frame = +1
Query: 163 PXXXGXPPPPPP 198
P PPPPPP
Sbjct: 942 PAFPPPPPPPPP 953
Score = 21.0 bits (42), Expect(2) = 2.5
Identities = 6/6 (100%), Positives = 6/6 (100%)
Frame = +2
Query: 185 PPPPPP 202
PPPPPP
Sbjct: 907 PPPPPP 912
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 33.1 bits (72), Expect = 0.070
Identities = 13/31 (41%), Positives = 14/31 (45%)
Frame = +2
Query: 137 PPXXXPXPPXXXXGXPPPPPPPXXXGRXKKK 229
PP P P PPPPPPP + K K
Sbjct: 9 PPPPPPPPGFEPPSQPPPPPPPGYVKKRKNK 39
Score = 30.3 bits (65), Expect = 0.49
Identities = 14/32 (43%), Positives = 15/32 (46%), Gaps = 2/32 (6%)
Frame = +2
Query: 140 PXXXPXPPXXXXGXPPP--PPPPXXXGRXKKK 229
P P PP G PP PPPP G KK+
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPPPPGYVKKR 36
Score = 29.9 bits (64), Expect = 0.65
Identities = 15/30 (50%), Positives = 15/30 (50%), Gaps = 2/30 (6%)
Frame = +2
Query: 182 PP--PPPPPXXXGRXKKKXXXXXPPPPPPP 265
PP PPPPP G PPPPPPP
Sbjct: 5 PPGNPPPPPPPPGFEPPS----QPPPPPPP 30
Score = 28.3 bits (60), Expect = 2.0
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = +3
Query: 246 PPPPPPPXXXGGGXXXPPP 302
PPPPPPP PPP
Sbjct: 10 PPPPPPPGFEPPSQPPPPP 28
Score = 27.9 bits (59), Expect = 2.6
Identities = 10/20 (50%), Positives = 10/20 (50%)
Frame = +2
Query: 245 PPPPPPPXXXXGGGXXXPPP 304
PPPPPPP PPP
Sbjct: 9 PPPPPPPPGFEPPSQPPPPP 28
Score = 27.5 bits (58), Expect = 3.5
Identities = 13/33 (39%), Positives = 14/33 (42%), Gaps = 2/33 (6%)
Frame = +3
Query: 135 PPXXXXPXPPXXXXXXP--PPPPPXXXXVXXKK 227
PP P PP P PPPPP V +K
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPPPPGYVKKRK 37
>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
Cap1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 551
Score = 25.8 bits (54), Expect(2) = 0.12
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = +2
Query: 176 GXPPPPPPP 202
G PPPPPPP
Sbjct: 304 GLPPPPPPP 312
Score = 25.0 bits (52), Expect(2) = 0.12
Identities = 10/25 (40%), Positives = 10/25 (40%)
Frame = +2
Query: 245 PPPPPPPXXXXGGGXXXPPPXXXXG 319
PPPPPPP P P G
Sbjct: 308 PPPPPPPSNDFWKDSNEPAPADNKG 332
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 30.3 bits (65), Expect = 0.49
Identities = 15/45 (33%), Positives = 15/45 (33%), Gaps = 2/45 (4%)
Frame = +1
Query: 136 PPXXXXXXPPXXXGXPPPPPPPXXXGSXXKKXXXXXXPP--PPPP 264
PP P P PPPPP PP PPPP
Sbjct: 1690 PPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPP 1734
Score = 29.5 bits (63), Expect = 0.86
Identities = 18/57 (31%), Positives = 18/57 (31%)
Frame = +2
Query: 134 TPPXXXPXPPXXXXGXPPPPPPPXXXGRXKKKXXXXXPPPPPPPXXXXGGGXXXPPP 304
TPP P PPPPP PPPP P G PPP
Sbjct: 1689 TPPVRPQSAAPPQMSAPTPPPPPMSV-----------PPPPSAPPMPAGPPSAPPPP 1734
Score = 29.5 bits (63), Expect = 0.86
Identities = 16/57 (28%), Positives = 16/57 (28%), Gaps = 1/57 (1%)
Frame = +3
Query: 135 PPXXXXPXPPXXXXXXPPPPPPXXXXVXXKKXXXXXXPP-PPPPPXXXGGGXXXPPP 302
PP P PPPPP PP PPPP P P
Sbjct: 1690 PPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVPNP 1746
>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 23.8 bits (49), Expect(2) = 0.97
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = +2
Query: 182 PPPPPPP 202
PPPPPPP
Sbjct: 370 PPPPPPP 376
Score = 23.8 bits (49), Expect(2) = 0.97
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = +2
Query: 245 PPPPPPP 265
PPPPPPP
Sbjct: 371 PPPPPPP 377
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 28.3 bits (60), Expect = 2.0
Identities = 15/42 (35%), Positives = 15/42 (35%)
Frame = +2
Query: 137 PPXXXPXPPXXXXGXPPPPPPPXXXGRXKKKXXXXXPPPPPP 262
P P P G PP PPP K PP PPP
Sbjct: 1174 PSSGIPPVPKPAAGVPPVPPP--SEAPPVPKPSVGVPPVPPP 1213
Score = 27.1 bits (57), Expect = 4.6
Identities = 17/58 (29%), Positives = 17/58 (29%), Gaps = 3/58 (5%)
Frame = +2
Query: 140 PXXXPXPPXXXXGXPPPPPPPXXXGRXKKKXXXXXPPPPP---PPXXXXGGGXXXPPP 304
P P P PP P P K P PPP PP G PP
Sbjct: 1155 PSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPP 1212
Score = 27.1 bits (57), Expect = 4.6
Identities = 17/59 (28%), Positives = 17/59 (28%), Gaps = 3/59 (5%)
Frame = +3
Query: 135 PPXXXXPXPPXXXXXXPPPPPPXXXXVXXKKXXXXXXPPP---PPPPXXXGGGXXXPPP 302
P P P P PPP V PPP PP P G P P
Sbjct: 1174 PSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVP 1232
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 27.9 bits (59), Expect = 2.6
Identities = 12/35 (34%), Positives = 12/35 (34%)
Frame = +2
Query: 161 PXXXXGXPPPPPPPXXXGRXKKKXXXXXPPPPPPP 265
P PP PP PPPPPPP
Sbjct: 161 PNSMVSPPPSFQPPSAAAPATSLPSDYNPPPPPPP 195
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 23.8 bits (49), Expect(2) = 8.2
Identities = 8/18 (44%), Positives = 8/18 (44%)
Frame = +1
Query: 247 PPPPPPXXXXGGGXXXPP 300
PPPPPP PP
Sbjct: 5 PPPPPPAPAPAAAAPAPP 22
Score = 20.6 bits (41), Expect(2) = 8.2
Identities = 6/7 (85%), Positives = 6/7 (85%)
Frame = +1
Query: 181 PPPPPPP 201
P PPPPP
Sbjct: 3 PAPPPPP 9
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,554,767
Number of Sequences: 5004
Number of extensions: 48749
Number of successful extensions: 653
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 205
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 575740598
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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