Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_H19
         (1091 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       27   0.29 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   0.71 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    25   0.89 
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   1.1  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   8.3  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 27.1 bits (57), Expect = 0.29
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = -1

Query: 776 SPPXLXPQKGXPXXGPXGFPPGXKXPPXXFXTPGXG 669
           SPP   P +G P  GP G PP  + P     +P  G
Sbjct: 38  SPPN--PSQGPPPGGPPGAPPS-QNPSQMMISPASG 70



 Score = 23.8 bits (49), Expect = 2.7
 Identities = 13/42 (30%), Positives = 16/42 (38%)
 Frame = +2

Query: 176 GXPPPPPPPXXXGRXKKKXXXXXPPPPPPPXXXXGGGXXXPP 301
           G P P P P    +  ++     P   PPP    GG    PP
Sbjct: 19  GAPGPQPSPHQSPQAPQRGSPPNPSQGPPP----GGPPGAPP 56


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.6 bits (46), Expect(2) = 0.71
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +2

Query: 176  GXPPPPPPP 202
            G P PPPPP
Sbjct: 1855 GSPEPPPPP 1863



 Score = 21.0 bits (42), Expect(2) = 0.71
 Identities = 6/6 (100%), Positives = 6/6 (100%)
 Frame = +2

Query: 248  PPPPPP 265
            PPPPPP
Sbjct: 1859 PPPPPP 1864


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 25.4 bits (53), Expect = 0.89
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +2

Query: 182  PPPPPPPXXXGR 217
            PPPPPPP   G+
Sbjct: 1355 PPPPPPPPSSGQ 1366



 Score = 25.0 bits (52), Expect = 1.2
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = +3

Query: 246  PPPPPPPXXXG 278
            PPPPPPP   G
Sbjct: 1355 PPPPPPPPSSG 1365



 Score = 22.2 bits (45), Expect = 8.3
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +3

Query: 249  PPPPPPXXXGG 281
            PPPPPP    G
Sbjct: 1355 PPPPPPPPSSG 1365


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.6 bits (46), Expect(2) = 1.1
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = +1

Query: 184 PPPPPPXXXGSXXKK 228
           PPPPPP   G    K
Sbjct: 343 PPPPPPSSSGPDSAK 357



 Score = 22.2 bits (45), Expect = 8.3
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +3

Query: 249 PPPPPPXXXG 278
           PPPPPP   G
Sbjct: 343 PPPPPPSSSG 352



 Score = 20.6 bits (41), Expect(2) = 1.1
 Identities = 6/7 (85%), Positives = 6/7 (85%)
 Frame = +1

Query: 181 PPPPPPP 201
           P PPPPP
Sbjct: 341 PAPPPPP 347


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.2 bits (45), Expect = 8.3
 Identities = 13/37 (35%), Positives = 13/37 (35%), Gaps = 2/37 (5%)
 Frame = -2

Query: 742  PXXGPXGFP--RGXKXPPXXXGPPGXVXXFFPLGNPP 638
            P   P G P   G K P    G P      F   NPP
Sbjct: 1131 PFTSPGGIPGPNGIKMPSFMEGMPHLPFTPFNFWNPP 1167


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 253,514
Number of Sequences: 438
Number of extensions: 11452
Number of successful extensions: 58
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 146,343
effective HSP length: 59
effective length of database: 120,501
effective search space used: 36632304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)