Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_H17
         (924 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr...    31   0.23 
SPAC23C4.05c |||LEA domain protein|Schizosaccharomyces pombe|chr...    27   3.7  
SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces pomb...    27   3.7  
SPAC17G6.02c |||RTA1-like protein|Schizosaccharomyces pombe|chr ...    26   8.6  
SPBC56F2.12 |ilv5||acetohydroxyacid reductoisomerase|Schizosacch...    26   8.6  
SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|c...    26   8.6  

>SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 501

 Score = 31.1 bits (67), Expect = 0.23
 Identities = 17/58 (29%), Positives = 30/58 (51%)
 Frame = -2

Query: 608 MQSGXYATPNRSSISCVPPRATNLCSSAPVSHR*SFKYKRQQLWIQPRDVSSLRLSRG 435
           ++S    +P+ S+IS  PP   N   S+P++   S K  R +   +P   + L+L +G
Sbjct: 388 LKSQCNVSPSPSNISDAPPSKLNRSYSSPLASISSRKVVRMKYSFEPETENELKLKKG 445


>SPAC23C4.05c |||LEA domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 431

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +3

Query: 276 SVATMSAWTEEMLSWRDERLG-LTELPSTTTRRKHRSAPY 392
           SV+  S WTEE L    E  G L  +P ++T+   R  P+
Sbjct: 359 SVSKQSTWTEEELKEELESFGELVPVPFSSTKAFERLLPH 398


>SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 605

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +3

Query: 462 ISRLYPELLALIFERLPVRDRGRAAQVCRAWRDAADRRSVW 584
           +S L  E+   I   L  R   +AAQV + W++ AD   +W
Sbjct: 110 LSLLPVEISFRILSFLDARSLCQAAQVSKHWKELADDDVIW 150


>SPAC17G6.02c |||RTA1-like protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 324

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 21/82 (25%), Positives = 32/82 (39%)
 Frame = +3

Query: 399 HRPHLPSAHVSEPPTEPQGTHISRLYPELLALIFERLPVRDRGRAAQVCRAWRDAADRRS 578
           H P  PS    EP   P  T +  +    LAL    + VR   R  ++ + W  A     
Sbjct: 180 HHPIRPSTGRREPDV-PY-TRVRTMSCNCLALATFAMVVRSVYRVIELAQGWEGAVITHE 237

Query: 579 VWRGVXAALHLRRPAPVLFASL 644
           VW  +   + +   + +L  SL
Sbjct: 238 VWFDIFDFIPMIFTSALLIPSL 259


>SPBC56F2.12 |ilv5||acetohydroxyacid
           reductoisomerase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 404

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 13/27 (48%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
 Frame = +1

Query: 298 GLRKCCPGGTNGLALPSYRA-RRRGEN 375
           G R C  GG NGL L  Y+  R RG +
Sbjct: 265 GERGCLMGGINGLFLAQYQVLRERGHS 291


>SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 577

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = +3

Query: 468 RLYP-ELLALIFERLPVRDRGRAAQVCRAWRD 560
           R+ P E+L  I ++L  +   +  QVC+ WRD
Sbjct: 137 RILPREVLLCILQQLNFKSIVQCMQVCKHWRD 168


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,683,659
Number of Sequences: 5004
Number of extensions: 53546
Number of successful extensions: 143
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 467341524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)