Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_H16
         (810 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1136 + 24218601-24218734,24218769-24219906                       30   2.5  
01_06_0565 + 30287253-30287502,30287522-30289010,30289133-302892...    29   4.4  
11_01_0035 - 256087-256185,256287-256430,256521-256632,256777-25...    25   8.0  

>07_03_1136 + 24218601-24218734,24218769-24219906
          Length = 423

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 19/65 (29%), Positives = 21/65 (32%), Gaps = 5/65 (7%)
 Frame = +1

Query: 532 PPXXPXKXGGXXXXPPXP-----XGXKKKKXGGGGXXXXXXXXXXXXXKKTXXXKXGGGG 696
           P   P   GG    PP P      G  ++  GGGG                     GGGG
Sbjct: 118 PSLPPGAGGGGGARPPAPGGGGGGGAPRRVLGGGGGGGALARPPGGGRGGALGRPPGGGG 177

Query: 697 GGXXP 711
           GG  P
Sbjct: 178 GGGGP 182


>01_06_0565 +
           30287253-30287502,30287522-30289010,30289133-30289277,
           30289679-30289729
          Length = 644

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 18/65 (27%), Positives = 21/65 (32%), Gaps = 4/65 (6%)
 Frame = +3

Query: 531 APXXPXKXGGFXXXP----PXPXGXKKKKKXGGGXXXPPXFFFPPPXXKNXXXXKXXGGG 698
           +P  P   GG+   P    P P         GGG    P     PP   +       GGG
Sbjct: 113 SPTTPGGGGGYTPTPSDTPPSPSSDTSPSTPGGGCSSSPTPCDAPPSPSSDTSPTTPGGG 172

Query: 699 GXXPP 713
           G   P
Sbjct: 173 GGYSP 177



 Score = 28.7 bits (61), Expect = 5.8
 Identities = 18/65 (27%), Positives = 21/65 (32%), Gaps = 4/65 (6%)
 Frame = +3

Query: 531 APXXPXKXGGFXXXP----PXPXGXKKKKKXGGGXXXPPXFFFPPPXXKNXXXXKXXGGG 698
           +P  P   GG+   P    P P         GGG    P     PP   +       GGG
Sbjct: 165 SPTTPGGGGGYSPTPSDTPPSPSSDTSPTTPGGGGGYTPTPSDAPPSPSSDTSPTTPGGG 224

Query: 699 GXXPP 713
           G   P
Sbjct: 225 GGYTP 229



 Score = 28.7 bits (61), Expect = 5.8
 Identities = 18/65 (27%), Positives = 21/65 (32%), Gaps = 4/65 (6%)
 Frame = +3

Query: 531 APXXPXKXGGFXXXP----PXPXGXKKKKKXGGGXXXPPXFFFPPPXXKNXXXXKXXGGG 698
           +P  P   GG+   P    P P         GGG    P     PP   +       GGG
Sbjct: 191 SPTTPGGGGGYTPTPSDAPPSPSSDTSPTTPGGGGGYTPTPSDAPPSPSSDTSPTTPGGG 250

Query: 699 GXXPP 713
           G   P
Sbjct: 251 GGYTP 255



 Score = 28.7 bits (61), Expect = 5.8
 Identities = 18/65 (27%), Positives = 21/65 (32%), Gaps = 4/65 (6%)
 Frame = +3

Query: 531 APXXPXKXGGFXXXP----PXPXGXKKKKKXGGGXXXPPXFFFPPPXXKNXXXXKXXGGG 698
           +P  P   GG+   P    P P         GGG    P     PP   +       GGG
Sbjct: 217 SPTTPGGGGGYTPTPSDAPPSPSSDTSPTTPGGGGGYTPTPSDTPPSPSSGSSPTTPGGG 276

Query: 699 GXXPP 713
           G   P
Sbjct: 277 GGYTP 281


>11_01_0035 -
           256087-256185,256287-256430,256521-256632,256777-256958,
           257038-257169,257297-258589,259133-259837,260465-260549,
           260604-260650,260810-260900,261838-262101,262195-262309,
           262455-262570,262713-262847,262969-263036,263292-263411
          Length = 1235

 Score = 25.0 bits (52), Expect(2) = 8.0
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = -2

Query: 713 GGXXPPPPPP 684
           GG  PPPPPP
Sbjct: 939 GGPPPPPPPP 948



 Score = 21.4 bits (43), Expect(2) = 8.0
 Identities = 9/20 (45%), Positives = 9/20 (45%)
 Frame = -2

Query: 701  PPPPPPFXXXXVFXXGGGKK 642
            PPPPPP          GG K
Sbjct: 941  PPPPPPPPGSLPRNLAGGDK 960


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,601,605
Number of Sequences: 37544
Number of extensions: 339392
Number of successful extensions: 3188
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1530
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3045
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2209429392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)