Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_H16
         (810 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006714-20|AAK29723.2|  281|Caenorhabditis elegans Serpentine r...    30   2.3  
AC006714-16|AAK29721.3|  281|Caenorhabditis elegans Serpentine r...    30   2.3  
U64609-1|AAB04598.1|  405|Caenorhabditis elegans Sperm-specific ...    29   5.2  
AF000198-8|AAP68908.1|  435|Caenorhabditis elegans Collagen prot...    28   6.9  

>AC006714-20|AAK29723.2|  281|Caenorhabditis elegans Serpentine
           receptor, class z protein9 protein.
          Length = 281

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = +2

Query: 92  YLSYFKASFKIFCKCL 139
           YL Y + SFK FCKCL
Sbjct: 240 YLMYHRPSFKTFCKCL 255


>AC006714-16|AAK29721.3|  281|Caenorhabditis elegans Serpentine
           receptor, class z protein8 protein.
          Length = 281

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = +2

Query: 92  YLSYFKASFKIFCKCL 139
           YL Y + SFK FCKCL
Sbjct: 240 YLMYHRPSFKTFCKCL 255


>U64609-1|AAB04598.1|  405|Caenorhabditis elegans Sperm-specific
           family, class qprotein 2 protein.
          Length = 405

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 12/28 (42%), Positives = 13/28 (46%)
 Frame = -3

Query: 655 GGGKKKXGGXXXPPPXFFFFXXPXGXGG 572
           GGG  K GG   PPP    +    G GG
Sbjct: 31  GGGASKVGGGAAPPPGTSVYMGAGGGGG 58


>AF000198-8|AAP68908.1|  435|Caenorhabditis elegans Collagen protein
           51 protein.
          Length = 435

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 17/57 (29%), Positives = 17/57 (29%)
 Frame = +1

Query: 532 PPXXPXKXGGXXXXPPXPXGXKKKKXGGGGXXXXXXXXXXXXXKKTXXXKXGGGGGG 702
           PP  P   GG    P    G      GGGG                     GGGGGG
Sbjct: 314 PPRTPAGGGGGGDFPAGGGGGGYSTGGGGGRADSGGAAGGAGGAGGYSGGGGGGGGG 370


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,981,473
Number of Sequences: 27780
Number of extensions: 209817
Number of successful extensions: 1183
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 507
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1070
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1987863822
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)