Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_H15
         (928 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    29   1.2  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    28   2.1  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    27   3.8  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -3

Query: 476 DPXPPPXPPGRXXSVXGEXEXXPPPPPXF 390
           +P PPP PPG         +  PPPPP +
Sbjct: 8   NPPPPPPPPG----FEPPSQPPPPPPPGY 32


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 17/47 (36%), Positives = 18/47 (38%), Gaps = 1/47 (2%)
 Frame = -3

Query: 473 PXPPPXPPGRXXSVXGEXEXXPPP-PPXFTXXXGRVX*XXKXXXPXP 336
           P PPP PPG    V G     PPP PP  +    R         P P
Sbjct: 761 PPPPPPPPG----VAGAGPPPPPPPPPAVSAGGSRYYAPAPQAEPEP 803



 Score = 26.6 bits (56), Expect = 5.0
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = +3

Query: 825 GPPXXPSPQGXGGXXNPPXXP 887
           GPP  P P G  G   PP  P
Sbjct: 760 GPPPPPPPPGVAGAGPPPPPP 780


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 12/26 (46%), Positives = 12/26 (46%)
 Frame = +1

Query: 397 GGGGGXXSXSPXTDXXRPGGXGGGXG 474
           GGG G     P      PGG GGG G
Sbjct: 227 GGGPGGFEGGPGGFGGGPGGFGGGLG 252


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,469,604
Number of Sequences: 5004
Number of extensions: 14859
Number of successful extensions: 58
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 52
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 469338710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)