Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_H14
         (902 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L10990-8|AAB59173.2|  223|Caenorhabditis elegans Hypothetical pr...    31   1.5  
Z75545-3|CAA99886.1|  922|Caenorhabditis elegans Hypothetical pr...    24   8.4  

>L10990-8|AAB59173.2|  223|Caenorhabditis elegans Hypothetical
           protein C30A5.3 protein.
          Length = 223

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +2

Query: 605 YKDTRRFPLEAPSCALLFRPCRLPDTCPPFSLREAWRFL 721
           Y+  R+F +E    ALL +   +P+TC   +  E W FL
Sbjct: 71  YEHLRQFCIELNGLALLLQRECIPETCQQMTATEQWIFL 109


>Z75545-3|CAA99886.1|  922|Caenorhabditis elegans Hypothetical
           protein K10D3.4 protein.
          Length = 922

 Score = 23.8 bits (49), Expect(2) = 8.4
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +2

Query: 785 PNPRSXRPVXLSGNYR 832
           P P +  PV L+GNYR
Sbjct: 866 PQPANLVPVELAGNYR 881



 Score = 22.6 bits (46), Expect(2) = 8.4
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = +2

Query: 629 LEAPSCALLFRPCRLPDTCPP 691
           LE   C  L    RLP+ CPP
Sbjct: 846 LERYICCGLESDVRLPNVCPP 866


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,815,047
Number of Sequences: 27780
Number of extensions: 395934
Number of successful extensions: 974
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 913
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 974
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2297313942
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)