Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_H13
         (901 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC26H8.09c |snf59||SWI/SNF complex subunit Snf59|Schizosacchar...    27   2.7  
SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces...    26   6.3  
SPAPB1A10.13 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    26   6.3  

>SPBC26H8.09c |snf59||SWI/SNF complex subunit
           Snf59|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 515

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 16/67 (23%), Positives = 28/67 (41%), Gaps = 1/67 (1%)
 Frame = +2

Query: 281 KKVTNKEXXXXXXXXXXXXXTPKNAVMVINEMIPKEQIANNFKVE-PNPNKHFKQTTPTY 457
           K+ TN +             + K +  + N  + + +   NFK+E P P+  F+   P  
Sbjct: 104 KESTNLDDLNMSEEPKHHDSSNKESTNLDNSNMDESENQKNFKIEEPKPSGDFRNEGPKQ 163

Query: 458 CADLTID 478
           C D  I+
Sbjct: 164 CDDSKIE 170


>SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1441

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -1

Query: 643 KDAQLDHGQRLLFGGLSAALSTFLDLFDDDISDG 542
           ++ +LD G   L+G   A +   LD+++ D S G
Sbjct: 443 EEVRLDEGDDTLYGTNDAEMDDMLDIYETDESVG 476


>SPAPB1A10.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 529

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = +1

Query: 232 PPIISTSKWILQYLMSEESDKQGTSPQTEPAPQATPHA 345
           P   +   W  Q + S +      SP T P+ QA+ HA
Sbjct: 436 PTTENKESWTNQGIKSSQQRSANASPATSPSNQASIHA 473


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,145,400
Number of Sequences: 5004
Number of extensions: 60861
Number of successful extensions: 160
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 454497130
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)