Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_H13
         (901 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    41   2e-05
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        23   5.0  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        23   5.0  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        23   5.0  
DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    22   6.6  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   6.6  
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    22   8.8  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    22   8.8  

>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 40.7 bits (91), Expect = 2e-05
 Identities = 25/72 (34%), Positives = 36/72 (50%)
 Frame = +2

Query: 344 PKNAVMVINEMIPKEQIANNFKVEPNPNKHFKQTTPTYCADLTIDGTVYQGYGENKLLAR 523
           PKNAV  +NE+  K         +  P        P +   + IDG  Y+G G  K +A+
Sbjct: 34  PKNAVCALNEL--KSGAVYKVVDQTGPTH-----APIFTIAVQIDGQTYEGKGRTKKMAK 86

Query: 524 SAAAEQAVRDII 559
            AAAE A+R+I+
Sbjct: 87  HAAAELALRNIV 98


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 16/80 (20%), Positives = 34/80 (42%), Gaps = 6/80 (7%)
 Frame = +2

Query: 347 KNAVMVINEMIPKEQIANNFKVEPNPNKHFKQTTPTYCA-----DLTIDGTVYQGY-GEN 508
           +N +  ++ +  K  +   +  +P  N+  K+T    CA     ++     +Y GY G  
Sbjct: 182 ENELRALSSLFSKGCLVGTWSPDPAINRRLKETYSNMCALCEKPEVCDYPDIYSGYEGAL 241

Query: 509 KLLARSAAAEQAVRDIIIKK 568
           + LA +       + I +K+
Sbjct: 242 RCLAHNGGEIAWTKVIYVKR 261


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 16/80 (20%), Positives = 34/80 (42%), Gaps = 6/80 (7%)
 Frame = +2

Query: 347 KNAVMVINEMIPKEQIANNFKVEPNPNKHFKQTTPTYCA-----DLTIDGTVYQGY-GEN 508
           +N +  ++ +  K  +   +  +P  N+  K+T    CA     ++     +Y GY G  
Sbjct: 182 ENELRALSSLFSKGCLVGTWSPDPAINRRLKETYSNMCALCEKPEVCDYPDIYSGYEGAL 241

Query: 509 KLLARSAAAEQAVRDIIIKK 568
           + LA +       + I +K+
Sbjct: 242 RCLAHNGGEIAWTKVIYVKR 261


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 16/80 (20%), Positives = 34/80 (42%), Gaps = 6/80 (7%)
 Frame = +2

Query: 347 KNAVMVINEMIPKEQIANNFKVEPNPNKHFKQTTPTYCA-----DLTIDGTVYQGY-GEN 508
           +N +  ++ +  K  +   +  +P  N+  K+T    CA     ++     +Y GY G  
Sbjct: 182 ENELRALSSLFSKGCLVGTWSPDPAINRRLKETYSNMCALCEKPEVCDYPDIYSGYEGAL 241

Query: 509 KLLARSAAAEQAVRDIIIKK 568
           + LA +       + I +K+
Sbjct: 242 RCLAHNGGEIAWTKVIYVKR 261


>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +2

Query: 371 EMIPKEQIANNFKVEPNPNKHFKQT 445
           ++I   Q A+N ++EP P    +QT
Sbjct: 173 DVIEVIQKAHNMELEPTPGNTLRQT 197


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 10/36 (27%), Positives = 16/36 (44%)
 Frame = +2

Query: 344 PKNAVMVINEMIPKEQIANNFKVEPNPNKHFKQTTP 451
           PK++       IPK  ++     +P PN    Q +P
Sbjct: 356 PKSSESSTGSSIPKLNLSTALMSQPPPNFGVSQVSP 391


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -2

Query: 789 LCSTAPAVXXPTRPRXRALRV 727
           L     A+  PTRP  +ALR+
Sbjct: 171 LIEALDAILPPTRPTDKALRL 191


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -2

Query: 789 LCSTAPAVXXPTRPRXRALRV 727
           L     A+  PTRP  +ALR+
Sbjct: 228 LIEALDAILPPTRPTDKALRL 248


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 214,214
Number of Sequences: 438
Number of extensions: 4756
Number of successful extensions: 16
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29146299
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)