Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_H11
         (921 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC409.10 |ade7||phosphoribosylamidoimidazolesuccinocarboxamide...    41   3e-04
SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|ch...    28   2.1  
SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|ch...    27   2.8  
SPBC530.14c |dsk1||SR protein-specific kinase Dsk1|Schizosacchar...    26   6.5  
SPAC26H5.04 |||vacuolar import and degradation protein Vid28|Sch...    26   6.5  
SPAC23C4.07 |tht2|mug22|meiotically upregulated gene Mug22|Schiz...    26   6.5  
SPBC1734.07c |||TRAPP complex subunit Trs85 |Schizosaccharomyces...    26   6.5  

>SPBC409.10 |ade7||phosphoribosylamidoimidazolesuccinocarboxamide
           synthase Ade7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 299

 Score = 40.7 bits (91), Expect = 3e-04
 Identities = 46/217 (21%), Positives = 91/217 (41%), Gaps = 20/217 (9%)
 Frame = +2

Query: 182 GKTKQVFDVPDQPGYCLLLNKDRITAGDGVKAHDLEGKAAISNQTNAKVFEILKSAGIKT 361
           GK + +++  + P   L +  DRI+A D +  + +  K  +  + +   F++LK   ++T
Sbjct: 18  GKVRDLYECVEFPDDLLFVATDRISAYDFIMENGIPEKGKVLTKISEFWFDVLKPH-VQT 76

Query: 362 AFV--------------KIASETAFLSKKCEMIPIEWVTRRLATGSFLK--RNPGVPEGF 493
             +              +   + + L KK +++PIE + R   TGS  K  +  G   G 
Sbjct: 77  HLITSRWEELPPVITKHEELKDRSMLVKKYKILPIEAIVRGYITGSAWKEYQKQGTVHGL 136

Query: 494 RFTPPKQETFFKDDANHDPQWSEEQIISAKFNYNGL--LIGRDEVDYMRKATILIFEILE 667
                 +E     +    P     +      + + +  ++G +    + + ++ +++I  
Sbjct: 137 NVPTGMKEAEAFPEPLFTPSTKAAEGHDENIHPDEVSKIVGPELAKQVAETSVKLYKIAR 196

Query: 668 KAWALRDCALIDMKIEFGVD-TEGSIVLAD-VIDSDS 772
                +   + D K EFGVD T   IVL D V+  DS
Sbjct: 197 DVALKKGIIIADTKFEFGVDETTNKIVLVDEVLTPDS 233


>SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 487

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 17/41 (41%), Positives = 23/41 (56%)
 Frame = -1

Query: 780 HXQESESMTSANTMLPSVSTPNSIFMSISAQSRRAQAFSKI 658
           H QE+ SMT  + +LPS     S+    + QSRRA   SK+
Sbjct: 128 HVQEAASMTQLSHLLPS-----SLINLSNGQSRRAMLASKL 163


>SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 867

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 21/78 (26%), Positives = 33/78 (42%), Gaps = 3/78 (3%)
 Frame = -1

Query: 750 ANTMLPSVSTPNSIFMSISAQSRRAQAFSKISNIRIVAFLM*STS---SRPIRRPL*LNL 580
           A+  + +V+ P   F  I    R   A S  + I IV   + S     + PI  P  +  
Sbjct: 543 ASMWISNVAAPVLCFSIIQPLLRNLPAESDFAKILIVGIALASNVGGIASPISSPQNIVA 602

Query: 579 AEMICSSDHWGSWFASSL 526
            + +  +  WG WFA S+
Sbjct: 603 LQNMDPAAGWGEWFAVSI 620


>SPBC530.14c |dsk1||SR protein-specific kinase
           Dsk1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 544

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -3

Query: 757 DIRQYNATFCIDSEFYFHVNKCAVTQSPS 671
           D++  N   CID +   H+   A T SP+
Sbjct: 214 DLKPENVLICIDQDALQHIEAPATTSSPT 242


>SPAC26H5.04 |||vacuolar import and degradation protein
           Vid28|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 729

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = -3

Query: 235 KQAVPRLVRNIEYLFGLTLNEKFAQFILSN 146
           +   P+L+ N+  L  L++NEK+  F++ N
Sbjct: 49  RNGAPKLLLNLFSLENLSMNEKYQVFVVLN 78


>SPAC23C4.07 |tht2|mug22|meiotically upregulated gene
           Mug22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 201

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 27/122 (22%), Positives = 54/122 (44%)
 Frame = +2

Query: 308 NQTNAKVFEILKSAGIKTAFVKIASETAFLSKKCEMIPIEWVTRRLATGSFLKRNPGVPE 487
           NQ+  K   +  S  +K  F+ +A +   + K C M+  +      A  + LK    V +
Sbjct: 82  NQSLMKKTSVSTSNTVKMVFMSLAKQIEQMLKFCMMVYSKLCE---AFETTLK----VAK 134

Query: 488 GFRFTPPKQETFFKDDANHDPQWSEEQIISAKFNYNGLLIGRDEVDYMRKATILIFEILE 667
            F+     QE FF+    +  +  E Q++S  F    L++ +   D +  +   +++I+E
Sbjct: 135 EFQICDSSQEWFFQFQLGYHRKQMELQMLS--FVAEWLVLTQHYTDALNDSAKTLYDIME 192

Query: 668 KA 673
            +
Sbjct: 193 SS 194


>SPBC1734.07c |||TRAPP complex subunit Trs85 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 618

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 20/73 (27%), Positives = 28/73 (38%), Gaps = 6/73 (8%)
 Frame = -3

Query: 544 VVCVILKERLLFWRSEPEAFWYTRIPF*ERASCKAAGNPFNGDHLTFFG*ERSF------ 383
           V+C    +     +  P+ FW    PF +R   K      NG+ LT       F      
Sbjct: 60  VLCSRDADEFAMRKGYPKGFWELLYPFGDRIRGKVNRRGMNGEMLTLENLNLHFVPIDAL 119

Query: 382 RGNLNEGSFDSCR 344
             +L+E SF S R
Sbjct: 120 ESHLSEASFPSLR 132


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,464,545
Number of Sequences: 5004
Number of extensions: 73769
Number of successful extensions: 214
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 211
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 214
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 468512460
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)