Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_H11
         (921 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0447 + 17688248-17688319,17688414-17688515,17688852-176889...    45   1e-04
11_01_0728 + 6023361-6023495,6024880-6025212,6025306-6025361,602...    32   0.56 
11_08_0083 + 28256844-28258760                                         32   0.74 
11_03_0039 - 9145639-9146378,9149199-9149538                           30   2.3  
07_01_0139 - 1014952-1015165,1015271-1015350,1015420-1015629,101...    29   6.9  
07_03_1421 - 26451012-26451155,26451256-26451322,26451605-264516...    28   9.1  

>09_04_0447 +
           17688248-17688319,17688414-17688515,17688852-17688981,
           17689198-17689290,17689363-17689451,17689889-17689969,
           17690118-17690207,17690653-17690772,17690877-17690927,
           17691125-17691171,17691321-17691378,17691451-17691507
          Length = 329

 Score = 44.8 bits (101), Expect = 1e-04
 Identities = 45/206 (21%), Positives = 90/206 (43%), Gaps = 10/206 (4%)
 Frame = +2

Query: 167 KLLIEGKTKQVFDVPDQPGYCLLLNKDRITAGDGVKAHDLEGKAAISNQTNAKVFEILKS 346
           +L  +GK + V++  +   + +L+  DR +A D V A  +  K  + N+T+   F+  + 
Sbjct: 18  RLAAKGKVRDVYESGE---HLVLVTTDRQSAFDRVLA-SIPFKGQVLNETSLWWFDRTRH 73

Query: 347 AGIKTAFVKIASETAFLSKKCEMIPIEWVTRRLATGS-----FLKRNPGV----PEGFRF 499
                A V    +   ++K+C + P+E+V R   TGS     +   N G         R 
Sbjct: 74  I-TPNAVVSSPDKNVTIAKRCSVFPVEFVVRGYVTGSTDTSLWTVYNKGARNYCGNVLRD 132

Query: 500 TPPKQETFFKDDANHDPQWSEEQI-ISAKFNYNGLLIGRDEVDYMRKATILIFEILEKAW 676
              K +    +      + ++  + ++ +   N  L+ +++ D  R   + +F   ++  
Sbjct: 133 GMVKNQKLSANILTPTTKAADHDVPVTPEEIINSGLMSKEDFDEARSKALSLFAYGQEVA 192

Query: 677 ALRDCALIDMKIEFGVDTEGSIVLAD 754
                 L+D K EFG   +G+I+L D
Sbjct: 193 LENGLILVDTKYEFGKTADGTIMLID 218


>11_01_0728 +
           6023361-6023495,6024880-6025212,6025306-6025361,
           6025526-6025684,6025790-6025889,6026481-6026623,
           6026728-6026833,6027139-6027277,6027363-6027631,
           6027734-6027820
          Length = 508

 Score = 32.3 bits (70), Expect = 0.56
 Identities = 22/85 (25%), Positives = 40/85 (47%), Gaps = 3/85 (3%)
 Frame = -1

Query: 789 TEPHXQESESMTSANTMLPSVSTPNSI--FMSISAQSRRAQAFSKISNIRIVAFLM*STS 616
           + P  Q ++ + S        STP     F+SISA+ R A A  ++  ++ + +   S  
Sbjct: 93  SSPDTQGTDKIASGGASSTRSSTPPDSPGFLSISAEFRSAPAMGELGALQSIVYHRGSLR 152

Query: 615 SRPIRR-PL*LNLAEMICSSDHWGS 544
               R+ PL ++  ++ CS D W +
Sbjct: 153 LLDQRKLPLEVDYIDVKCSGDGWNA 177


>11_08_0083 + 28256844-28258760
          Length = 638

 Score = 31.9 bits (69), Expect = 0.74
 Identities = 20/51 (39%), Positives = 27/51 (52%)
 Frame = +2

Query: 422 IEWVTRRLATGSFLKRNPGVPEGFRFTPPKQETFFKDDANHDPQWSEEQII 574
           IE   RRL   S   R  GVP  FR    K ET  ++D + DP+  EE+++
Sbjct: 413 IEETGRRL---SICARQFGVPFKFRAIAAKWETVRREDLHLDPEEEEEEVL 460


>11_03_0039 - 9145639-9146378,9149199-9149538
          Length = 359

 Score = 30.3 bits (65), Expect = 2.3
 Identities = 27/92 (29%), Positives = 45/92 (48%), Gaps = 6/92 (6%)
 Frame = +2

Query: 464 KRNPGVPEGF---RFTPPKQETFFKDDANHDPQWSEEQIISAKFNYNGLLIGRDEVDYM- 631
           KRNP VP+G+       P  ET   D   +  +++ + +  AKFN     I +  VD + 
Sbjct: 202 KRNPPVPQGYYGCGLVLPVAETLVADLCGNPLEYAVQLVRKAKFNVTDEYI-KSTVDMIA 260

Query: 632 -RKATILIFEILEKAWALRDCALI-DMKIEFG 721
            RK   L   ++++ + + D   I + KI+FG
Sbjct: 261 SRKWPSL---VVDRTYVVSDITTIGEDKIDFG 289


>07_01_0139 -
           1014952-1015165,1015271-1015350,1015420-1015629,
           1015925-1016044,1016650-1016709,1017129-1017204,
           1018189-1018352,1018428-1018490,1018815-1018902,
           1018997-1019647,1019965-1020449
          Length = 736

 Score = 28.7 bits (61), Expect = 6.9
 Identities = 20/75 (26%), Positives = 31/75 (41%), Gaps = 1/75 (1%)
 Frame = +2

Query: 68  RDPHRIGSSLHSYLRSKIAKMSHPKQVGQYKLGKLLIEGKTKQVFDVPD-QPGYCLLLNK 244
           R P  I S   S +     K+  P   GQ++ G+LL  G    V++  + Q G    + +
Sbjct: 330 RPPGAINSMQTSIVNQSAPKVEMPSVAGQWQKGRLLGSGTFGCVYEATNRQTGALCAMKE 389

Query: 245 DRITAGDGVKAHDLE 289
             I   D   A  L+
Sbjct: 390 VNIIPDDAKSAESLK 404


>07_03_1421 -
           26451012-26451155,26451256-26451322,26451605-26451657,
           26451736-26451806,26453340-26453482,26453858-26453919,
           26454008-26454100,26454203-26454314,26454432-26454547,
           26454625-26454787,26454829-26455349,26455429-26455528,
           26457472-26457552,26457666-26457877
          Length = 645

 Score = 28.3 bits (60), Expect = 9.1
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +2

Query: 164 GKLLIEGKT-KQVFDVPDQPGYCLLLNKDRITAGDGVKAHDLEG 292
           G  L+ G+T K+  +V ++   CL LN  R   GD VK +   G
Sbjct: 349 GTSLVNGETQKKAEEVLEEVLLCLTLNNLRADRGDNVKENSCHG 392


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,047,150
Number of Sequences: 37544
Number of extensions: 488377
Number of successful extensions: 1147
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1146
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2624101760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)