Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_H11
         (921 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    24   2.2  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    22   9.0  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   9.0  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     22   9.0  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    22   9.0  

>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +2

Query: 476 GVPEGFRFTPPKQETFFKDDANHDPQWS 559
           G P+GF     + +   +DDA H P  S
Sbjct: 404 GSPDGFESVTSQYKNIREDDARHIPHAS 431


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.8 bits (44), Expect = 9.0
 Identities = 13/37 (35%), Positives = 16/37 (43%)
 Frame = -1

Query: 552 WGSWFASSLKNVSCFGGVNLKPSGTPGFLFRNEPVAR 442
           W S FA +   +SC G V         F  R+ PV R
Sbjct: 511 WNSAFAIAPAVISCLGIVATMAVACLLFHHRDTPVVR 547


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.8 bits (44), Expect = 9.0
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +2

Query: 167 KLLIEGKTKQVFDVPDQP 220
           ++ +EG  K+ F+VP QP
Sbjct: 191 QVFLEGSQKRKFNVPLQP 208


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 21.8 bits (44), Expect = 9.0
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +2

Query: 167 KLLIEGKTKQVFDVPDQP 220
           ++ +EG  K+ F+VP QP
Sbjct: 191 QVFLEGSQKRKFNVPLQP 208


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.8 bits (44), Expect = 9.0
 Identities = 13/37 (35%), Positives = 16/37 (43%)
 Frame = -1

Query: 552 WGSWFASSLKNVSCFGGVNLKPSGTPGFLFRNEPVAR 442
           W S FA +   +SC G V         F  R+ PV R
Sbjct: 601 WNSAFAIAPAVISCLGIVATMAVACLLFHHRDTPVVR 637


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 236,300
Number of Sequences: 438
Number of extensions: 5012
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29992872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)