Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_H10
         (934 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0366 - 22389591-22390527,22391296-22391429,22391762-223918...    30   2.3  
04_01_0288 + 3824337-3826385                                           29   4.0  
12_02_1233 + 27224219-27225607                                         29   7.0  

>02_04_0366 -
           22389591-22390527,22391296-22391429,22391762-22391816,
           22392364-22393225,22393342-22393459,22393647-22393737,
           22394627-22394670
          Length = 746

 Score = 30.3 bits (65), Expect = 2.3
 Identities = 21/75 (28%), Positives = 33/75 (44%)
 Frame = -3

Query: 392 CFGVYAAI*HISSISLRPVVSMSQPIREYFPGGRPTGFSASAGGTSVFASISLPFTFTSV 213
           C   +     +++ S+     M + +R   PG  P GF+  AG  SVF  +S+   FTS+
Sbjct: 484 CILFWTVYSQMTTFSVEQATRMDRHLR---PGAAPGGFAIPAGSLSVFLFLSI-LLFTSL 539

Query: 212 TMAINA*FANSLMNR 168
              +    A  L  R
Sbjct: 540 NERVLVPAARRLTRR 554


>04_01_0288 + 3824337-3826385
          Length = 682

 Score = 29.5 bits (63), Expect = 4.0
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +1

Query: 481 YRMLKDMVSHKILKTKSEISALTDFLDWLEKE 576
           +++ K   SH   KT +++S L  F DWL+ +
Sbjct: 395 HKITKATTSHHWFKTLNDLSTLVGFADWLDMQ 426


>12_02_1233 + 27224219-27225607
          Length = 462

 Score = 28.7 bits (61), Expect = 7.0
 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = +1

Query: 352 IDEICQIAAYTPKQTYSQYIMPYGDLNPGARRRHNVRVVTVG-RYRMLK 495
           IDE+C  + + P  TYS Y    G L    +    +R+     RYR++K
Sbjct: 209 IDEVCSSSGWEPFDTYSVYFR--GSLYVHCQNNCVIRITIANHRYRIIK 255


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,346,724
Number of Sequences: 37544
Number of extensions: 360816
Number of successful extensions: 951
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 928
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 951
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2670960720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)