Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_H09
         (930 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64857-15|AAC25858.1|  470|Caenorhabditis elegans Hypothetical p...    30   2.7  
AF016424-3|AAB65330.1|  251|Caenorhabditis elegans Hypothetical ...    28   8.3  

>U64857-15|AAC25858.1|  470|Caenorhabditis elegans Hypothetical
           protein C37C3.1 protein.
          Length = 470

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 19/42 (45%), Positives = 22/42 (52%)
 Frame = +3

Query: 108 SRTVHHGRQVRSSLRLHRSGPRKRMVRRERSRLLQGHRTPHQ 233
           S +    R  R S    RS PRKR VRR RSR     RTP++
Sbjct: 335 SESTSRRRSGRHSRSRSRSPPRKRPVRRSRSR--SRSRTPNR 374


>AF016424-3|AAB65330.1|  251|Caenorhabditis elegans Hypothetical
           protein F39G3.5a protein.
          Length = 251

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 15/54 (27%), Positives = 24/54 (44%)
 Frame = +1

Query: 58  TLLCVCSPGSHLLRTQSLEQYIMAAKFVVLFACIALAQGSEWCDANAPDFFKDI 219
           T LC CSPG +  R   + + +    F+V      L  G+   + + P  F D+
Sbjct: 156 TYLCPCSPGKYRARLMPIHRAVGVGCFIVACVQCCLGYGNILLE-DQPGCFSDL 208


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,682,019
Number of Sequences: 27780
Number of extensions: 214952
Number of successful extensions: 715
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 595
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 702
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2391724104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)