Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_H08
         (967 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE...    53   1e-05
UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1; ...    47   6e-04
UniRef50_P03087 Cluster: Capsid protein VP1; n=1927; Polyomaviru...    40   0.072
UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4; Ma...    38   0.51 
UniRef50_P03023 Cluster: Lactose operon repressor; n=24; Enterob...    38   0.51 
UniRef50_A6DDM0 Cluster: Putative uncharacterized protein; n=1; ...    34   4.7  

>UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE -
           Myxococcus xanthus
          Length = 486

 Score = 53.2 bits (122), Expect = 1e-05
 Identities = 28/51 (54%), Positives = 32/51 (62%)
 Frame = +1

Query: 337 IHFMFQVQGEVWEVSXCINESANARGEAVXVLGALPLPRSLTRCPRSFGCG 489
           +H  F  + + W  S CI + A AR EAV VL ALPL RS TRC RS GCG
Sbjct: 252 VHCPFSTR-DTWRAS-CIRDPATARSEAVWVLVALPLLRSRTRCVRSVGCG 300


>UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1;
           Escherichia coli|Rep: Putative uncharacterized protein -
           Escherichia coli
          Length = 147

 Score = 47.2 bits (107), Expect = 6e-04
 Identities = 20/25 (80%), Positives = 22/25 (88%)
 Frame = +1

Query: 433 GALPLPRSLTRCPRSFGCGERYQLT 507
           G +PLPRSLTR  RSFGCGERY+LT
Sbjct: 34  GDIPLPRSLTRYARSFGCGERYRLT 58


>UniRef50_P03087 Cluster: Capsid protein VP1; n=1927;
           Polyomavirus|Rep: Capsid protein VP1 - Simian virus 40
           (SV40)
          Length = 364

 Score = 40.3 bits (90), Expect = 0.072
 Identities = 17/18 (94%), Positives = 17/18 (94%)
 Frame = +1

Query: 187 DPDMIRYIDEXGQTTTRM 240
           DPDMIRYIDE GQTTTRM
Sbjct: 346 DPDMIRYIDEFGQTTTRM 363


>UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4;
           Magnoliophyta|Rep: Putative reverse transcriptase -
           Zingiber officinale (Ginger)
          Length = 49

 Score = 37.5 bits (83), Expect = 0.51
 Identities = 15/16 (93%), Positives = 15/16 (93%)
 Frame = +2

Query: 386 ALMNRPTRGERRXAYW 433
           ALMNRPTRGERR AYW
Sbjct: 26  ALMNRPTRGERRFAYW 41


>UniRef50_P03023 Cluster: Lactose operon repressor; n=24;
           Enterobacteriaceae|Rep: Lactose operon repressor -
           Escherichia coli (strain K12)
          Length = 360

 Score = 37.5 bits (83), Expect = 0.51
 Identities = 18/24 (75%), Positives = 20/24 (83%)
 Frame = -3

Query: 455 ERGSGRAPNTXTASPRALADSLMQ 384
           +R +  APNT TASPRALADSLMQ
Sbjct: 325 KRKTTLAPNTQTASPRALADSLMQ 348


>UniRef50_A6DDM0 Cluster: Putative uncharacterized protein; n=1;
           Caminibacter mediatlanticus TB-2|Rep: Putative
           uncharacterized protein - Caminibacter mediatlanticus
           TB-2
          Length = 596

 Score = 34.3 bits (75), Expect = 4.7
 Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 5/54 (9%)
 Frame = +1

Query: 289 FVTIISCNKQVNNNNCIHFMFQVQGEVWE-----VSXCINESANARGEAVXVLG 435
           FV I+S  KQ N +  I ++F + G + E     VS  IN++ N  G+ V +LG
Sbjct: 191 FVGILSSYKQFNTDKKIDYLFVISGYLDEHKDSFVSRLINQAKNIEGKKVFILG 244


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 529,881,742
Number of Sequences: 1657284
Number of extensions: 7269448
Number of successful extensions: 14208
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 13728
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14190
length of database: 575,637,011
effective HSP length: 101
effective length of database: 408,251,327
effective search space used: 89815291940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)