Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP19_F_H07
(901 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY741200-1|AAU89102.1| 596|Caenorhabditis elegans STE20-like se... 31 0.85
AL132898-15|CAC14417.2| 596|Caenorhabditis elegans Hypothetical... 31 0.85
AY255668-1|AAQ96605.1| 167|Caenorhabditis elegans MiRP5 protein. 31 1.5
AF106575-2|AAQ62448.1| 506|Caenorhabditis elegans Hypothetical ... 31 1.5
AF098994-1|AAC67472.2| 167|Caenorhabditis elegans Hypothetical ... 31 1.5
AC006627-7|AAK85463.1| 218|Caenorhabditis elegans Hypothetical ... 30 2.6
Z78059-3|CAB01486.3| 345|Caenorhabditis elegans Hypothetical pr... 29 3.4
AF040659-3|AAK39392.1| 919|Caenorhabditis elegans Hypothetical ... 29 4.5
AF040659-2|AAK39393.1| 873|Caenorhabditis elegans Hypothetical ... 29 4.5
AC024791-2|AAK95891.1| 604|Caenorhabditis elegans Temporarily a... 29 4.5
Z78420-2|CAB01710.3| 738|Caenorhabditis elegans Hypothetical pr... 29 6.0
Z92838-5|CAB07404.2| 578|Caenorhabditis elegans Hypothetical pr... 28 7.9
>AY741200-1|AAU89102.1| 596|Caenorhabditis elegans STE20-like
serine/threonine kinase protein.
Length = 596
Score = 31.5 bits (68), Expect = 0.85
Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Frame = +3
Query: 480 AWHKRFMMRLNDCIDVDSCAWPTA--LLHHAHHQ--VDPKETVHRLINQLMAHNVPALVH 647
A+ K F + DC+ D PTA LL ++ + D K VH LI L +VP + H
Sbjct: 354 AYGKSFKTLIRDCLQKDPAKRPTASELLKYSFFKKGKDKKYLVHTLIENLA--SVPVVAH 411
Query: 648 YS 653
+S
Sbjct: 412 HS 413
>AL132898-15|CAC14417.2| 596|Caenorhabditis elegans Hypothetical
protein Y59A8B.23 protein.
Length = 596
Score = 31.5 bits (68), Expect = 0.85
Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Frame = +3
Query: 480 AWHKRFMMRLNDCIDVDSCAWPTA--LLHHAHHQ--VDPKETVHRLINQLMAHNVPALVH 647
A+ K F + DC+ D PTA LL ++ + D K VH LI L +VP + H
Sbjct: 354 AYGKSFKTLIRDCLQKDPAKRPTASELLKYSFFKKGKDKKYLVHTLIENLA--SVPVVAH 411
Query: 648 YS 653
+S
Sbjct: 412 HS 413
>AY255668-1|AAQ96605.1| 167|Caenorhabditis elegans MiRP5 protein.
Length = 167
Score = 30.7 bits (66), Expect = 1.5
Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Frame = +2
Query: 287 KKKMACATLKRNLDWESKAQLPTKRRRCSPFAA--SPSTSPGLKTSESKPSSFGESVSAP 460
KKK +T R+ +SK T ++R SP +P +SP + PSS + P
Sbjct: 58 KKKTKKSTKSRSKSLKSKQSAVTPKKRASPIPPQPAPPSSPKPTEESATPSSSFAPSTEP 117
Query: 461 VKITPERM 484
P+++
Sbjct: 118 TPTVPDKV 125
>AF106575-2|AAQ62448.1| 506|Caenorhabditis elegans Hypothetical
protein K04F1.14b protein.
Length = 506
Score = 30.7 bits (66), Expect = 1.5
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = +1
Query: 598 TASSISSWPTTCPHSCTIHF*TGSYDL*AN 687
T+SSI +WPTTC C + T DL N
Sbjct: 38 TSSSIKNWPTTCESVCGNLYLTSETDLSEN 67
>AF098994-1|AAC67472.2| 167|Caenorhabditis elegans Hypothetical
protein T06A4.2 protein.
Length = 167
Score = 30.7 bits (66), Expect = 1.5
Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Frame = +2
Query: 287 KKKMACATLKRNLDWESKAQLPTKRRRCSPFAA--SPSTSPGLKTSESKPSSFGESVSAP 460
KKK +T R+ +SK T ++R SP +P +SP + PSS + P
Sbjct: 58 KKKTKKSTKSRSKSLKSKQSAVTPKKRASPIPPQPAPPSSPKPTEESATPSSSFAPSTEP 117
Query: 461 VKITPERM 484
P+++
Sbjct: 118 TPTVPDKV 125
>AC006627-7|AAK85463.1| 218|Caenorhabditis elegans Hypothetical
protein E01A2.6 protein.
Length = 218
Score = 29.9 bits (64), Expect = 2.6
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +2
Query: 629 RARTRALFTFKQVRMICERMLHDQEV 706
R+ + FT V+MICER+L QE+
Sbjct: 147 RSSAKREFTMANVQMICERLLKQQEI 172
>Z78059-3|CAB01486.3| 345|Caenorhabditis elegans Hypothetical
protein C34B4.2a protein.
Length = 345
Score = 29.5 bits (63), Expect = 3.4
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = +2
Query: 365 RCSPFAASPSTSPGLKTSESKPSSFGESVSAPVKIT 472
RC P A+ P+ ++ E+K +S G S + P++ T
Sbjct: 224 RCPPQASIPAYYARVRMEETKAASSGNSTAGPIRAT 259
>AF040659-3|AAK39392.1| 919|Caenorhabditis elegans Hypothetical
protein ZK484.4a protein.
Length = 919
Score = 29.1 bits (62), Expect = 4.5
Identities = 26/83 (31%), Positives = 44/83 (53%), Gaps = 6/83 (7%)
Frame = +2
Query: 239 KQIR*HIRKPEDFVGRKK------KMACATLKRNLDWESKAQLPTKRRRCSPFAASPSTS 400
+Q + I+KPE ++ K +++ A R+ D S + P KRRR S ++S
Sbjct: 830 RQFQSLIQKPEAYMESLKQKYIESRVSSAKRMRSNDGASTSSRPAKRRR------SNASS 883
Query: 401 PGLKTSESKPSSFGESVSAPVKI 469
P +T+ S SS +S+ +PVK+
Sbjct: 884 PKKQTASSSASS-TKSLKSPVKL 905
>AF040659-2|AAK39393.1| 873|Caenorhabditis elegans Hypothetical
protein ZK484.4b protein.
Length = 873
Score = 29.1 bits (62), Expect = 4.5
Identities = 26/83 (31%), Positives = 44/83 (53%), Gaps = 6/83 (7%)
Frame = +2
Query: 239 KQIR*HIRKPEDFVGRKK------KMACATLKRNLDWESKAQLPTKRRRCSPFAASPSTS 400
+Q + I+KPE ++ K +++ A R+ D S + P KRRR S ++S
Sbjct: 784 RQFQSLIQKPEAYMESLKQKYIESRVSSAKRMRSNDGASTSSRPAKRRR------SNASS 837
Query: 401 PGLKTSESKPSSFGESVSAPVKI 469
P +T+ S SS +S+ +PVK+
Sbjct: 838 PKKQTASSSASS-TKSLKSPVKL 859
>AC024791-2|AAK95891.1| 604|Caenorhabditis elegans Temporarily
assigned gene nameprotein 63 protein.
Length = 604
Score = 29.1 bits (62), Expect = 4.5
Identities = 18/40 (45%), Positives = 26/40 (65%)
Frame = +2
Query: 362 RRCSPFAASPSTSPGLKTSESKPSSFGESVSAPVKITPER 481
RR SPF++S ST+P +K+ + S F ES+ V +PER
Sbjct: 220 RRRSPFSSSKSTAP-IKSRHYR-SRFSESLEDNVFRSPER 257
>Z78420-2|CAB01710.3| 738|Caenorhabditis elegans Hypothetical
protein F45H11.3 protein.
Length = 738
Score = 28.7 bits (61), Expect = 6.0
Identities = 23/68 (33%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
Frame = +2
Query: 281 GRKKKMACATLKR--NLDWESKAQLPTKRRRCSPFAASPSTSPGLKTSESKPSSFGESVS 454
G M ATL NL E K T + S AAS ST+P T+ + S G++
Sbjct: 594 GNFHNMIDATLAAFDNLSVEEKIIKETNGKAASNVAASHSTAPTTTTTSGEASGGGQATI 653
Query: 455 APVKITPE 478
+ K++PE
Sbjct: 654 SK-KMSPE 660
>Z92838-5|CAB07404.2| 578|Caenorhabditis elegans Hypothetical
protein T03D8.6 protein.
Length = 578
Score = 28.3 bits (60), Expect = 7.9
Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
Frame = +2
Query: 428 PSSFGES---VSAPVKITPERMAQEIYDEIKRLHR 523
PSSFG + VSA K+ PE +IY++ K LH+
Sbjct: 285 PSSFGVTQLIVSAMSKLFPEGHKDDIYNDPKVLHK 319
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,901,673
Number of Sequences: 27780
Number of extensions: 421235
Number of successful extensions: 1236
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1232
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2286823924
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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