Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_H06
         (953 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    25   0.76 
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    25   0.76 
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    22   9.4  
AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding prote...    22   9.4  

>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 25.4 bits (53), Expect = 0.76
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +1

Query: 655 MDSDFDLCKYSHDVYRXAAGWLRFGYGRXPSQGCT 759
           +   F L +YS  +++  +  L  GYGR P Q  T
Sbjct: 317 LQDSFWLEQYSWALFKAMSHMLCIGYGRFPPQSLT 351


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 25.4 bits (53), Expect = 0.76
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +1

Query: 655 MDSDFDLCKYSHDVYRXAAGWLRFGYGRXPSQGCT 759
           +   F L +YS  +++  +  L  GYGR P Q  T
Sbjct: 285 LQDSFWLEQYSWALFKAMSHMLCIGYGRFPPQSLT 319


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 9.4
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +1

Query: 382 RPRESSETGLRLVFG*FGHH 441
           RP E+S   L +VFG   HH
Sbjct: 22  RPAENSSQPLAVVFGLSLHH 41


>AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding protein
           ASP5 protein.
          Length = 143

 Score = 21.8 bits (44), Expect = 9.4
 Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = -3

Query: 471 AEKP-KAIPVLMVPKLAKNEAKTCFR 397
           A KP K++    V KLAKN  K+C +
Sbjct: 17  ALKPVKSMSADQVEKLAKNMRKSCLQ 42


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 246,434
Number of Sequences: 438
Number of extensions: 5498
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 31323201
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)