Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_H05
         (959 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    34   0.026
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    31   0.24 
SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces pomb...    30   0.42 
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    30   0.56 
SPBC3H7.02 |||sulfate transporter |Schizosaccharomyces pombe|chr...    29   0.97 
SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces pomb...    28   1.7  
SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr 2|...    27   3.0  
SPBC19C7.05 |||cell wall organization protein |Schizosaccharomyc...    27   5.2  
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc...    27   5.2  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   5.2  
SPAC4H3.02c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   5.2  
SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr 1||...    26   6.9  
SPAC3H1.04c |mdm31||mitochondrial inner membrane protein Mdm31|S...    26   9.1  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 34.3 bits (75), Expect = 0.026
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +1

Query: 382 PGDQMPDLDVPVPEKTPPPSEAPRDSPSPTEPPK 483
           P +++P L  P P   PPPS     SP P  PP+
Sbjct: 241 PPERVPSLSAPAPPPIPPPSNGTVSSP-PNSPPR 273


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 31.1 bits (67), Expect = 0.24
 Identities = 19/43 (44%), Positives = 23/43 (53%), Gaps = 8/43 (18%)
 Frame = +1

Query: 376  PAPGDQMPDL--DVPVPE------KTPPPSEAPRDSPSPTEPP 480
            PAP  Q+P    +VPVP       + PP S AP  +PS T PP
Sbjct: 1479 PAPVSQLPPAVPNVPVPSMIPSVAQQPPSSVAPATAPSSTLPP 1521



 Score = 28.3 bits (60), Expect = 1.7
 Identities = 12/33 (36%), Positives = 14/33 (42%)
 Frame = +1

Query: 379  APGDQMPDLDVPVPEKTPPPSEAPRDSPSPTEP 477
            AP    P + VP P   PP    P  +P P  P
Sbjct: 1704 APTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLP 1736


>SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 331

 Score = 30.3 bits (65), Expect = 0.42
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +1

Query: 376 PAPGDQMPDLDVPVPEKTPPPSEAPRDSPSPTEPPKLN 489
           P P + +P+   P+P + P P E   + P P EPP  N
Sbjct: 108 PLPNEPVPE--EPLPGEPPLPDEPVPEEPLPGEPPLPN 143



 Score = 28.7 bits (61), Expect = 1.3
 Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +1

Query: 376 PAPGDQMPDLDVPVPEKTPPPSEAPRDSPSPTEP-PKLN 489
           P P + +P  + P+P++  P    P + P P EP P+ N
Sbjct: 113 PVPEEPLPG-EPPLPDEPVPEEPLPGEPPLPNEPVPETN 150



 Score = 27.5 bits (58), Expect = 3.0
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +1

Query: 412 PVPEKTPPPSEAPRDSPSPTEPP 480
           P+P + P P+E   + P P EPP
Sbjct: 102 PLPREPPLPNEPVPEEPLPGEPP 124


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 29.9 bits (64), Expect = 0.56
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = +1

Query: 373 APAPGDQMPDLDVPVPEKTPPPSEAPRDSPSPTEPPKL 486
           +PA    +P    P+P   PPP++      SP   P L
Sbjct: 153 SPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSL 190



 Score = 26.2 bits (55), Expect = 6.9
 Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 6/44 (13%)
 Frame = +1

Query: 367 VIAPAPGDQMPDLDVPVPEKTPPP--SEAP----RDSPSPTEPP 480
           V +P     +P    P+P K PPP  S+AP       PS   PP
Sbjct: 181 VKSPPSAPSLPSAVPPMPPKVPPPPLSQAPVANTSSRPSSFAPP 224



 Score = 25.8 bits (54), Expect = 9.1
 Identities = 14/36 (38%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
 Frame = +1

Query: 376 PAPGDQMPDLDVPVPEKTPP-PSEAPRDSPSPTEPP 480
           P      P +  P P   PP PS+AP   PS   PP
Sbjct: 140 PTSAPPRPSIPPPSPASAPPIPSKAP-PIPSSLPPP 174


>SPBC3H7.02 |||sulfate transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 877

 Score = 29.1 bits (62), Expect = 0.97
 Identities = 18/54 (33%), Positives = 24/54 (44%)
 Frame = +1

Query: 373 APAPGDQMPDLDVPVPEKTPPPSEAPRDSPSPTEPPKLNLQMTAAEMRAHLAAK 534
           A  P D+ PD    VP   PPPS      P PT    ++ + T   +  H A+K
Sbjct: 15  ADLPQDEAPD---SVPGLVPPPSNFVPVYPEPTYSDTVSKKGTIVRVVRHTASK 65


>SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1018

 Score = 28.3 bits (60), Expect = 1.7
 Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
 Frame = +1

Query: 376  PAPGDQMPDLDVPVPEKTPPPSEAPRDSPSPTEPPKLNLQMTAA--EMRAHLAAKKKFDP 549
            P  G   P+  V +PE     S+   DS       K+NL   A   E+R  L  ++K+DP
Sbjct: 906  PGYGSLSPNTSVELPEINSDYSD---DSDDEGNKKKVNLPSWAESPELREQLKRQQKWDP 962

Query: 550  KKV 558
             K+
Sbjct: 963  DKI 965


>SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 997

 Score = 27.5 bits (58), Expect = 3.0
 Identities = 18/53 (33%), Positives = 25/53 (47%)
 Frame = +1

Query: 196  GKPGQYIGKVDDGSPAETAGLKRGDRILEVNGHSIAGETHKQVVARIKERPDD 354
            G  G Y+G +  GSPA    L+    I+ V+GH I   T       + E+P D
Sbjct: 895  GPEGVYVGSILYGSPALNM-LRAAHWIVAVDGHDI--NTFDDFYHMLLEKPTD 944


>SPBC19C7.05 |||cell wall organization protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 150

 Score = 26.6 bits (56), Expect = 5.2
 Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
 Frame = +1

Query: 373 APAPGDQMPDL--DVPVPEKTPPPSEAPRDSPSPTEPPKLNLQMTAAE 510
           AP P    P+   +  +    PP S+A R  P PTEPP +    T++E
Sbjct: 78  APPPYTAEPEARYNSTIHNPMPPMSQAYR--PPPTEPPTVPAYETSSE 123


>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 587

 Score = 26.6 bits (56), Expect = 5.2
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = +1

Query: 346 PDDAELLVIAPAPGDQMPDLDVPVPEKTPPPSEAPRDSPSP 468
           P    L  I  APG  MP+L++  P   PP    P   P+P
Sbjct: 500 PPGVPLPPIPGAPG--MPNLNMSQPPMVPPGMALPPGMPAP 538


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 26.6 bits (56), Expect = 5.2
 Identities = 14/45 (31%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
 Frame = +1

Query: 349 DDAELLVIAPAPGDQMPDLDVPVPEKTPPPSEAP-RDSPSPTEPP 480
           +  +LL+ +P P      +  P P   P P  AP    P P  PP
Sbjct: 723 EQQKLLLKSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPP 767


>SPAC4H3.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 391

 Score = 26.6 bits (56), Expect = 5.2
 Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 6/51 (11%)
 Frame = +1

Query: 343 RPDDAELLVIAPAPGDQMPDLDV-----PVPEKTPPPSEAPRD-SPSPTEP 477
           RPD  +L     +PG +   LD+     P PE   PP++ P D   SP EP
Sbjct: 146 RPDSQKL-----SPGKEKNTLDLKHCLLPSPEYKAPPAKKPEDYEASPGEP 191


>SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 992

 Score = 26.2 bits (55), Expect = 6.9
 Identities = 16/63 (25%), Positives = 30/63 (47%)
 Frame = +1

Query: 295 SIAGETHKQVVARIKERPDDAELLVIAPAPGDQMPDLDVPVPEKTPPPSEAPRDSPSPTE 474
           S++ ET ++  +++KE  +   L   +     Q P     +P  +   + AP+ SP  + 
Sbjct: 574 SLSEETKQEKPSKLKETVESKRL---STGVQKQSPAASKEIPVTSGSQTTAPKPSPWKSL 630

Query: 475 PPK 483
           PPK
Sbjct: 631 PPK 633


>SPAC3H1.04c |mdm31||mitochondrial inner membrane protein
           Mdm31|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
 Frame = +1

Query: 79  VLRPPTCPANGSAAIEPRLCHVRK-TPDFDG 168
           ++RP     N +    P LCHV K   DFDG
Sbjct: 503 LIRPIIAYINSTRTFIPILCHVSKPLSDFDG 533


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,442,573
Number of Sequences: 5004
Number of extensions: 50410
Number of successful extensions: 253
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 240
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 491307756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)