Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_H05
         (959 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    25   1.0  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       24   1.8  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   4.1  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    23   5.4  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    22   7.2  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    22   9.5  

>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 25.0 bits (52), Expect = 1.0
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -2

Query: 295 CGRSLRGCGRRVLSQRSLPESHRQPYRCTDRVF 197
           C R LR  GR+ +     PE+    Y  +DR++
Sbjct: 403 CLRELRNLGRKTIMVNYNPETVSTDYDMSDRLY 435


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 24.2 bits (50), Expect = 1.8
 Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 3/40 (7%)
 Frame = +1

Query: 379 APGDQ-MPDLDVPVPEK-TPP-PSEAPRDSPSPTEPPKLN 489
           APG Q  P      P++ +PP PS+ P     P  PP  N
Sbjct: 20  APGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQN 59


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.0 bits (47), Expect = 4.1
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -3

Query: 309 LAGNTVAVHFEDAVA 265
           L G TVAV+F D +A
Sbjct: 938 LVGKTVAVNFRDVIA 952


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 22.6 bits (46), Expect = 5.4
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +2

Query: 35  LKILMSPRARGTVSAYSD 88
           LK+L  PRARG +   SD
Sbjct: 334 LKLLTKPRARGCIIFGSD 351


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 22.2 bits (45), Expect = 7.2
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -3

Query: 63  RALGDIKILRNSTIGKW*GN 4
           ++L D+KILRN  I  +  N
Sbjct: 128 KSLDDVKILRNDRIDSYKSN 147


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 21.8 bits (44), Expect = 9.5
 Identities = 13/58 (22%), Positives = 23/58 (39%)
 Frame = -3

Query: 303 GNTVAVHFEDAVAAF*ASGLCRRAIVNLTDVLTGFSFFCVQIKPVAVEVWRLPHVAES 130
           G  + V F   +A+  A+ +   A++ +  VLT        I  +    W L  +  S
Sbjct: 422 GEVITVSFTATLASIGAASIPSAALITMLIVLTALGLPTNDISLLFAVDWMLDRIRTS 479


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,272
Number of Sequences: 438
Number of extensions: 4440
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 31565079
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)