Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_G24
         (991 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch...    30   0.58 
SPAC13G7.12c |||choline kinase |Schizosaccharomyces pombe|chr 1|...    27   4.1  
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce...    27   4.1  
SPCC825.05c |||splicing coactivator SRRM1 |Schizosaccharomyces p...    26   7.1  
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      26   9.4  
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    26   9.4  

>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
           Zds1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 938

 Score = 29.9 bits (64), Expect = 0.58
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +3

Query: 417 INARIPEVVPQLKVSKKPRTIPPKLKHRLNIPIEGS 524
           I  R+P  VP   +S KP  IP  +   LN+ +E S
Sbjct: 588 IPPRVPTPVPGRTLSPKPTRIPTPIPSSLNVSLESS 623


>SPAC13G7.12c |||choline kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 456

 Score = 27.1 bits (57), Expect = 4.1
 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 6/49 (12%)
 Frame = +3

Query: 450 LKVSKKPRTIPPKLKHRLNIPIE---GSPTEV---LENTIKEVISEYNH 578
           LK+  K R+IP   KHR  +P++     P      L N   E +++Y+H
Sbjct: 251 LKIKAKKRSIPLSQKHRTLVPVDFEYAGPNLCAFDLANYFAEWMADYHH 299


>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2104

 Score = 27.1 bits (57), Expect = 4.1
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = +1

Query: 553  KKLYLNIITSFQEHL**IRNLEKAYTGNXKDNGQRLERIMESDD 684
            +K YLNI+  +Q     + NLEKA      +  +  E++M  DD
Sbjct: 971  EKDYLNIMADYQHSSQHLSNLEKAINEKNLNIRELNEKLMRLDD 1014


>SPCC825.05c |||splicing coactivator SRRM1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 301

 Score = 26.2 bits (55), Expect = 7.1
 Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +2

Query: 449 IKSIKE-TKNYTAKVET*T*HSNRRESYRGSGKYNKR 556
           I  +K+ T+    + +T T HSNRRES R S  Y+ R
Sbjct: 142 ISKLKDRTEASKEESKTVTDHSNRRESRRESTYYDSR 178


>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 25.8 bits (54), Expect = 9.4
 Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 8/70 (11%)
 Frame = -3

Query: 614 KFLIHHKCSWKLVIIFRYNFFYCIFQNLCRT--------PFDWNVKSMFQLWRYSSWFL* 459
           K   HH  ++ +   F + FF+  F + CR         P+D NV   F  + Y S F  
Sbjct: 60  KLPYHHHHTFTIEAFFYWFFFFFFFFSHCRRFHIAIFIHPYDSNVVPFFCFFFYFSLFSF 119

Query: 458 YF*LWHNLRY 429
           +  L+ +L +
Sbjct: 120 FSFLFTSLHF 129


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 25.8 bits (54), Expect = 9.4
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -3

Query: 617  SKFLIHHKCSWKLVIIFRYNFF 552
            S+F++ +K  W LVI   YN F
Sbjct: 2261 SRFIVRNKTRWSLVIAEPYNDF 2282


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,019,052
Number of Sequences: 5004
Number of extensions: 60111
Number of successful extensions: 140
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 511279616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)