Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_G24
         (991 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               23   5.6  
DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.              22   7.4  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    22   9.8  

>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 22.6 bits (46), Expect = 5.6
 Identities = 7/21 (33%), Positives = 15/21 (71%)
 Frame = +3

Query: 483 PKLKHRLNIPIEGSPTEVLEN 545
           P+L+H LNI ++    ++++N
Sbjct: 317 PELQHNLNILVDMCEQDIIQN 337


>DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.
          Length = 120

 Score = 22.2 bits (45), Expect = 7.4
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +3

Query: 420 NARIPEVVPQLKVSKKP 470
           N  +PE  P+ K +KKP
Sbjct: 19  NVTMPETTPRRKKNKKP 35


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 21.8 bits (44), Expect = 9.8
 Identities = 6/8 (75%), Positives = 7/8 (87%)
 Frame = -3

Query: 530 CRTPFDWN 507
           CRTPF W+
Sbjct: 412 CRTPFQWD 419


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 201,964
Number of Sequences: 438
Number of extensions: 4058
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 32774469
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)