Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_G23
         (894 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10 |...    30   0.39 
SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch...    30   0.39 
SPBP35G2.11c |||transcription related zf-ZZ type zinc finger pro...    28   2.1  
SPBC609.05 |pob3||FACT complex component Pob3|Schizosaccharomyce...    27   3.6  
SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|c...    26   8.3  
SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces pom...    26   8.3  

>SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 791

 Score = 30.3 bits (65), Expect = 0.39
 Identities = 15/42 (35%), Positives = 19/42 (45%)
 Frame = +2

Query: 299 NINLVYKMKDSLADFNDNKTKPTPIAKVAPELKQNADTDMGI 424
           N+NL Y  K  +   ND   KP  IA +A   + N  T   I
Sbjct: 523 NVNLQYSPKTPICKINDETLKPPTIANIAGHKQMNHLTSENI 564


>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1374

 Score = 30.3 bits (65), Expect = 0.39
 Identities = 18/51 (35%), Positives = 27/51 (52%)
 Frame = +2

Query: 623 RMVLVDKAVPSLKLPRHV*XVEYIDEDXLNNEGDNYIQTESDEXPXRPKKI 775
           RM L+DK +  L   R +  +E ++ED L +EG  YI+T     P    K+
Sbjct: 610 RMGLIDKHLKPLDFRRKIADLETLEEDELKDEG--YIETYERYVPKSWMKV 658


>SPBP35G2.11c |||transcription related zf-ZZ type zinc finger
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 397

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 11/22 (50%), Positives = 17/22 (77%), Gaps = 1/22 (4%)
 Frame = -2

Query: 425 LYPCPYQHFVLIQ-ELPSLLAL 363
           L+PCP  HFVL++  +PS+ +L
Sbjct: 95  LHPCPKPHFVLVRSSIPSVASL 116


>SPBC609.05 |pob3||FACT complex component Pob3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 512

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 17/51 (33%), Positives = 25/51 (49%)
 Frame = +2

Query: 494 PEDSSLRQIWTDLTGRNNWTPTDFSYICIQHFSVDCFKLDNEDRMVLVDKA 646
           P    + QI+  LTGR   TP +F      H +V C    NE ++  +DK+
Sbjct: 324 PAFEVVSQIFRGLTGRKVTTPAEF-LSHEGHAAVKCSYKANEGQLYCLDKS 373


>SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 865

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +3

Query: 33  SLRFWLICYCILLCSLVILRNKFNLF 110
           SL F  +   ILLC   +LR KFN +
Sbjct: 35  SLGFSSLLSVILLCIFTLLRTKFNTY 60


>SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1325

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 14/49 (28%), Positives = 27/49 (55%)
 Frame = +2

Query: 293 DMNINLVYKMKDSLADFNDNKTKPTPIAKVAPELKQNADTDMGITKTCA 439
           +MN+ +  K KDS    ++N+  PTP  + +P +K  + T    +++ A
Sbjct: 440 EMNV-IKDKNKDSTVRASNNENIPTPDKQASPFVKNLSSTSSPFSQSSA 487


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,141,891
Number of Sequences: 5004
Number of extensions: 64331
Number of successful extensions: 161
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)