Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_G23
         (894 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0579 + 30114127-30114177,30114691-30115386,30115883-301160...    28   8.7  
01_06_0365 + 28767538-28767696,28768299-28768520,28768630-287688...    28   8.7  

>02_05_0579 +
           30114127-30114177,30114691-30115386,30115883-30116083,
           30116354-30116658,30116944-30117073
          Length = 460

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 18/58 (31%), Positives = 26/58 (44%)
 Frame = +2

Query: 287 FFDMNINLVYKMKDSLADFNDNKTKPTPIAKVAPELKQNADTDMGITKTCAVLGCDDC 460
           F D  I+  ++MKD  AD ++ + KP     V PE    A  D G++   A      C
Sbjct: 295 FDDAGIDSYFEMKDVPADESNEQPKP-----VQPECSNVASVDSGMSNPAARADSSHC 347


>01_06_0365 +
           28767538-28767696,28768299-28768520,28768630-28768868,
           28769499-28770024,28770115-28770388,28770495-28771134,
           28771220-28771448,28771682-28771948,28772031-28772294,
           28772700-28773344
          Length = 1154

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = +3

Query: 15  PXHYRESLRFW-LICYCILLCSLVILRNKFNLFG 113
           P   R+  RFW L+C  + + SLV ++ ++ LFG
Sbjct: 621 PHQLRKDSRFWALMCILMAIISLVSIQLEYFLFG 654


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,242,918
Number of Sequences: 37544
Number of extensions: 338088
Number of successful extensions: 665
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 653
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 665
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2518669100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)