Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_G23
         (894 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L23648-7|AAA28031.2|  962|Caenorhabditis elegans Abnormal cell l...    37   0.022
AF104917-1|AAD22772.1|  962|Caenorhabditis elegans LIN-36 protein.     37   0.022
U32305-6|AAV58892.1|  411|Caenorhabditis elegans Hypothetical pr...    31   1.5  
U32305-5|AAK18855.2|  501|Caenorhabditis elegans Hypothetical pr...    31   1.5  
Z78065-5|CAB01515.1|  954|Caenorhabditis elegans Hypothetical pr...    29   3.4  
Z81563-3|CAB04565.1|  222|Caenorhabditis elegans Hypothetical pr...    29   4.5  

>L23648-7|AAA28031.2|  962|Caenorhabditis elegans Abnormal cell
           lineage protein 36 protein.
          Length = 962

 Score = 36.7 bits (81), Expect = 0.022
 Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 11/69 (15%)
 Frame = +2

Query: 479 MFFGFPEDSSLRQIWTDLTG-------RNNWTPTDFSY----ICIQHFSVDCFKLDNEDR 625
           M   FP D   R+IW +L G       R+   P  FS     IC +HF+ +CF+  N ++
Sbjct: 178 MHLNFPADLDRRRIWANLLGFKYKDILRSKMGPVSFSIAAGPICTEHFAEECFRNHNFNK 237

Query: 626 MVLVDKAVP 652
             +    VP
Sbjct: 238 SAIEAFGVP 246


>AF104917-1|AAD22772.1|  962|Caenorhabditis elegans LIN-36 protein.
          Length = 962

 Score = 36.7 bits (81), Expect = 0.022
 Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 11/69 (15%)
 Frame = +2

Query: 479 MFFGFPEDSSLRQIWTDLTG-------RNNWTPTDFSY----ICIQHFSVDCFKLDNEDR 625
           M   FP D   R+IW +L G       R+   P  FS     IC +HF+ +CF+  N ++
Sbjct: 178 MHLNFPADLDRRRIWANLLGFKYKDILRSKMGPVSFSIAAGPICTEHFAEECFRNHNFNK 237

Query: 626 MVLVDKAVP 652
             +    VP
Sbjct: 238 SAIEAFGVP 246


>U32305-6|AAV58892.1|  411|Caenorhabditis elegans Hypothetical
           protein B0336.7b protein.
          Length = 411

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 5/79 (6%)
 Frame = +2

Query: 449 CDDCKNMDS--IMFFGFPEDSSLRQIWTD---LTGRNNWTPTDFSYICIQHFSVDCFKLD 613
           C  C+  +S  I  F +P+   L++ W     L      + T   YIC  HFS D F + 
Sbjct: 46  CLVCQRSESEKIRLFKWPKSEELKEQWLHFFRLPATVLQSATQEPYICCYHFSADTFVM- 104

Query: 614 NEDRMVLVDKAVPSLKLPR 670
            +DR+     A+P  +  R
Sbjct: 105 IDDRIFWKMTALPKYRQRR 123


>U32305-5|AAK18855.2|  501|Caenorhabditis elegans Hypothetical
           protein B0336.7a protein.
          Length = 501

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 5/79 (6%)
 Frame = +2

Query: 449 CDDCKNMDS--IMFFGFPEDSSLRQIWTD---LTGRNNWTPTDFSYICIQHFSVDCFKLD 613
           C  C+  +S  I  F +P+   L++ W     L      + T   YIC  HFS D F + 
Sbjct: 136 CLVCQRSESEKIRLFKWPKSEELKEQWLHFFRLPATVLQSATQEPYICCYHFSADTFVM- 194

Query: 614 NEDRMVLVDKAVPSLKLPR 670
            +DR+     A+P  +  R
Sbjct: 195 IDDRIFWKMTALPKYRQRR 213


>Z78065-5|CAB01515.1|  954|Caenorhabditis elegans Hypothetical
           protein T09E8.2 protein.
          Length = 954

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 12/33 (36%), Positives = 23/33 (69%)
 Frame = +2

Query: 554 PTDFSYICIQHFSVDCFKLDNEDRMVLVDKAVP 652
           PT +  IC+ HF+   F+++ +D++VL  +A+P
Sbjct: 583 PTRYR-ICVYHFNRKAFQVNQDDKIVLDAEALP 614


>Z81563-3|CAB04565.1|  222|Caenorhabditis elegans Hypothetical
           protein K04H8.3 protein.
          Length = 222

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +2

Query: 563 FSYICIQHFSVDCFKLDNEDRMVLVDKAVPSLKLP 667
           +++IC  HF +DC KL    ++ + D+ V  L LP
Sbjct: 115 YNFICSSHFHLDC-KLTETLQICMTDRYVAVLGLP 148


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,135,045
Number of Sequences: 27780
Number of extensions: 347840
Number of successful extensions: 844
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 819
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 842
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2265843888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)