Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_G22
         (902 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2D10.09 |||3-hydroxyisobutyryl-CoA hydrolase|Schizosaccharom...    52   1e-07
SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6 |Schizosaccharom...    28   2.1  
SPAC12G12.11c |||DUF544 family protein|Schizosaccharomyces pombe...    27   3.6  
SPBC776.06c |||spindle pole body interacting protein |Schizosacc...    26   8.4  
SPBC23G7.07c |||replication regulator |Schizosaccharomyces pombe...    26   8.4  

>SPBC2D10.09 |||3-hydroxyisobutyryl-CoA
           hydrolase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 429

 Score = 51.6 bits (118), Expect = 1e-07
 Identities = 32/129 (24%), Positives = 61/129 (47%), Gaps = 4/129 (3%)
 Frame = +1

Query: 202 NEYITTKENNGTREITLNHEKTKNSLSLNMMNHLIEAINKNKEDISLRAIIISAKGNVFS 381
           N+ +  +  NG R  TLN  K  N+++++M++ ++  +   +E    + II+   G  FS
Sbjct: 55  NDTVLYESKNGARIFTLNRPKVLNAINVDMIDSILPKLVSLEESNLAKVIILKGNGRSFS 114

Query: 382 AGHNLK--ELQSSSG-VDQHKEIFSKATELMKSIILSPVPVIAKVNGFATAAGCQLVATC 552
           +G ++K   L    G + + +  F++   L  ++     PV+A +NG     G  L    
Sbjct: 115 SGGDIKAAALSIQDGKLPEVRHAFAQEYRLSHTLATYQKPVVALMNGITMGGGSGLAMHV 174

Query: 553 DI-IVCSDS 576
              I C D+
Sbjct: 175 PFRIACEDT 183


>SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 892

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 12/49 (24%), Positives = 22/49 (44%)
 Frame = +1

Query: 148 FVQKTGSRSLSVLRRFLHNEYITTKENNGTREITLNHEKTKNSLSLNMM 294
           F+Q      +  LR  +H+++I ++  N        HE  K  + L +M
Sbjct: 405 FLQSLSQEEIDDLRAMVHSDHIYSRLTNSLAPSVYGHEIIKKGILLQLM 453


>SPAC12G12.11c |||DUF544 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 365

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -2

Query: 613 NIPKFAPGVETCLSQNIRLYHRWLLADNQPL 521
           +I KF  G E   +  +RL H W+L+D+  L
Sbjct: 130 DIEKFEYGHEIFCTFGVRLVHGWILSDDMGL 160


>SPBC776.06c |||spindle pole body interacting protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 598

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +1

Query: 301 LIEAINKNKEDISLRAIIISAKGNVFSAGHNLKEL 405
           L + +++ +ED SL  I  S K NVFS   N+ ++
Sbjct: 40  LPDRVHERREDWSLFFIHFSKKSNVFSLFSNVDDI 74


>SPBC23G7.07c |||replication regulator |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 277

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +3

Query: 126 RILHHV*FCSEDRIKVIVGTTPFSSQ 203
           R+  H+ +C  ++I V +GTTP  +Q
Sbjct: 191 RLEEHINYCKANKIGVGIGTTPRIAQ 216


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,383,432
Number of Sequences: 5004
Number of extensions: 65474
Number of successful extensions: 191
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 456499320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)