Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP19_F_G22
(902 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0164 + 26405052-26405208,26405304-26405473,26406278-264063... 61 1e-09
03_02_0770 + 11038971-11039392,11040071-11040353,11040697-11040798 54 2e-07
01_06_0153 - 27044553-27044669,27044842-27044964,27045066-270451... 50 3e-06
01_01_0746 + 5772340-5773083 44 1e-04
02_05_0163 + 26400486-26400621,26401477-26401646,26402623-264027... 32 0.54
06_03_0633 + 22960514-22960619,22961402-22961503,22961850-22961908 31 1.7
11_03_0046 - 9309754-9309820,9310414-9311132 30 2.9
11_06_0189 - 21039217-21039348,21039480-21039738,21039841-210400... 29 3.8
08_02_1375 - 26524373-26525440,26525566-26525739,26526557-26526751 28 8.8
>02_05_0164 +
26405052-26405208,26405304-26405473,26406278-26406352,
26406570-26406660,26406768-26406848,26407192-26407353,
26407425-26407501,26407670-26407846
Length = 329
Score = 60.9 bits (141), Expect = 1e-09
Identities = 36/123 (29%), Positives = 65/123 (52%), Gaps = 1/123 (0%)
Frame = +1
Query: 226 NNGTREITLNHEKTKNSLSLNMMNHLIEAINKNKEDISLRAIII-SAKGNVFSAGHNLKE 402
++G E+ L + +N++ M+ L AI K K D + + +++ S+ VF AG +LKE
Sbjct: 51 DSGIVEMRLERPEARNAIGREMLQGLRSAIEKVKADATAKVVLLASSVPKVFCAGADLKE 110
Query: 403 LQSSSGVDQHKEIFSKATELMKSIILSPVPVIAKVNGFATAAGCQLVATCDIIVCSDSSK 582
+ S + + + S + + LS +P IA V G A G +L +CD+ +C +++
Sbjct: 111 RRLMSPCEVREFVNSLRSTFLSFEALS-IPTIAIVEGAAFGGGLELALSCDLRICGENAT 169
Query: 583 FPL 591
F L
Sbjct: 170 FSL 172
>03_02_0770 + 11038971-11039392,11040071-11040353,11040697-11040798
Length = 268
Score = 53.6 bits (123), Expect = 2e-07
Identities = 30/114 (26%), Positives = 55/114 (48%)
Frame = +1
Query: 244 ITLNHEKTKNSLSLNMMNHLIEAINKNKEDISLRAIIISAKGNVFSAGHNLKELQSSSGV 423
+T+N K N+L+ MM L A + D + A++++ +G F +G +L +
Sbjct: 26 VTINRPKALNALTRPMMVSLAAAFRRLDADDGVAAVVLAGRGRAFCSGVDLTAAEEVFKG 85
Query: 424 DQHKEIFSKATELMKSIILSPVPVIAKVNGFATAAGCQLVATCDIIVCSDSSKF 585
D + A + + + P++ + GFA AG ++ CDI+V S+KF
Sbjct: 86 D----VKDPAADPVVQMERCRKPIVGAIAGFAVTAGFEIALACDILVAGRSAKF 135
>01_06_0153 -
27044553-27044669,27044842-27044964,27045066-27045161,
27045323-27045370,27046360-27046458,27046554-27046592,
27047032-27047133,27047225-27047347,27047535-27047783
Length = 331
Score = 50.0 bits (114), Expect = 3e-06
Identities = 33/119 (27%), Positives = 54/119 (45%), Gaps = 1/119 (0%)
Frame = +1
Query: 232 GTREITLNHEKTKNSLSLNMMNHLIEAINKNKEDISLRAIIISAKGNVFSAGHNLKELQS 411
G +IT+N +N+ + L+ A ++D S+ II++ KG + L+
Sbjct: 80 GIAKITINRPDRRNAFRPLTVKELMRAFEDARDDSSIGVIILTGKGTQSFCSGGDQALRD 139
Query: 412 SSG-VDQHKEIFSKATELMKSIILSPVPVIAKVNGFATAAGCQLVATCDIIVCSDSSKF 585
+ G VD +L I P PVIA V G+A G L CD+ + +D++ F
Sbjct: 140 ADGYVDFDSFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIF 198
>01_01_0746 + 5772340-5773083
Length = 247
Score = 44.4 bits (100), Expect = 1e-04
Identities = 25/80 (31%), Positives = 39/80 (48%)
Frame = +1
Query: 346 AIIISAKGNVFSAGHNLKELQSSSGVDQHKEIFSKATELMKSIILSPVPVIAKVNGFATA 525
A++I+ +G FS G +L + + + H + L+ ++ PVP +A V G A A
Sbjct: 54 ALVIAGEGKYFSNGFDL-DWARTVPAELHASMGGAFRGLVADLLALPVPTVAAVTGHAAA 112
Query: 526 AGCQLVATCDIIVCSDSSKF 585
AGC L D +V S F
Sbjct: 113 AGCALALAHDAVVMRASRGF 132
>02_05_0163 +
26400486-26400621,26401477-26401646,26402623-26402713,
26402822-26402873,26403462-26403565,26403648-26403724,
26403890-26404069
Length = 269
Score = 32.3 bits (70), Expect = 0.54
Identities = 27/118 (22%), Positives = 51/118 (43%), Gaps = 1/118 (0%)
Frame = +1
Query: 241 EITLNHEKTKNSLSLNMMNHLIEAINKNKEDISLRAIII-SAKGNVFSAGHNLKELQSSS 417
E+ L + KN+++ M L + K + D +++ +++ S+ VF AG +LK L
Sbjct: 49 ELRLERPEVKNAINWEAMRLLRGVVEKVEADDTVKVVLVTSSVPGVFCAGADLKALS--- 105
Query: 418 GVDQHKEIFSKATELMKSIILSPVPVIAKVNGFATAAGCQLVATCDIIVCSDSSKFPL 591
+P IA + G A G +L +CD+ +C +++ L
Sbjct: 106 -----------------------IPTIAVIEGAALGGGLELALSCDLRICGENATLGL 140
>06_03_0633 + 22960514-22960619,22961402-22961503,22961850-22961908
Length = 88
Score = 30.7 bits (66), Expect = 1.7
Identities = 18/72 (25%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Frame = +1
Query: 229 NGTREITLNHEKTKNSLSLNMMNHLIEAINKNKEDISLRAIII-SAKGNVFSAGHNLKEL 405
NG ITL+ K N+++L M +++ + + S++ +++ S+ FSAG ++K L
Sbjct: 17 NGVAVITLDRPKALNAMNLEMDLRYKAFLDEWETNPSVKCVLVESSSPRAFSAGGDVKRL 76
Query: 406 QSSSGVDQHKEI 441
+ + + E+
Sbjct: 77 ANDCTMPEIIEV 88
>11_03_0046 - 9309754-9309820,9310414-9311132
Length = 261
Score = 29.9 bits (64), Expect = 2.9
Identities = 21/109 (19%), Positives = 48/109 (44%)
Frame = +1
Query: 229 NGTREITLNHEKTKNSLSLNMMNHLIEAINKNKEDISLRAIIISAKGNVFSAGHNLKELQ 408
+G +T+ L+ + LI ++ ++ LR ++ +++ F G +
Sbjct: 11 DGIFVLTMASSDGHQYLTDEAIGDLIASLTAVRDTPGLRGLVTTSRLGSFCDG-----VD 65
Query: 409 SSSGVDQHKEIFSKATELMKSIILSPVPVIAKVNGFATAAGCQLVATCD 555
+ +++ ++ E+++ ++ P P A VNG AT+ G L D
Sbjct: 66 HDAARQPDEQVAARVGEVVRLLLEMPAPTAAAVNGDATSLGLALALAHD 114
>11_06_0189 -
21039217-21039348,21039480-21039738,21039841-21040004,
21040371-21040533,21040615-21042137
Length = 746
Score = 29.5 bits (63), Expect = 3.8
Identities = 16/53 (30%), Positives = 26/53 (49%)
Frame = -1
Query: 635 SNSRCGTEYTKVCTRSGNLLESEHTIISQVATS*QPAAVANPFTLAITGTGLK 477
S +CG+ + C + + L+ E I +A S P +A+PF + T LK
Sbjct: 648 SMQKCGSHVVENCLKQASELDREMIIHELMADSKLPHIMADPFGNFVIQTALK 700
>08_02_1375 - 26524373-26525440,26525566-26525739,26526557-26526751
Length = 478
Score = 28.3 bits (60), Expect = 8.8
Identities = 16/51 (31%), Positives = 28/51 (54%)
Frame = +1
Query: 361 AKGNVFSAGHNLKELQSSSGVDQHKEIFSKATELMKSIILSPVPVIAKVNG 513
A +V A ++++ + + V++ +EIF+ A ELM + SPV V G
Sbjct: 34 APRSVVRAAISVEKGEKAYTVEKSEEIFNAAKELMPGGVNSPVRAFKSVGG 84
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,056,295
Number of Sequences: 37544
Number of extensions: 365400
Number of successful extensions: 873
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 860
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 873
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2553813320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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