Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_G19
         (942 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    29   0.72 
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    29   1.3  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   2.9  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 29.5 bits (63), Expect = 0.72
 Identities = 30/131 (22%), Positives = 37/131 (28%)
 Frame = -1

Query: 915 PPDPXWXXXXXPGGGXPPXXXXXKSPPPPPKGXXXGPGXXXXGXSXTXXPXXXXXPGXXP 736
           PP P        G    P       PPPPP+     P         +        P   P
Sbjct: 337 PPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRS---APSTGRQPPPLSSSRAVSNPPAPPP 393

Query: 735 XIFXXPXXXSPTXXXXXPFXNXXSXGXQPXGKXPXXPPFSPXLAFXXPXAHXXFPXGXPX 556
            I   P   +P      P  N       P    P  PP +P      P A    P G P 
Sbjct: 394 AI---PGRSAPA---LPPLGNASRTSTPPVPTPPSLPPSAP--PSLPPSAPPSLPMGAPA 445

Query: 555 IPXITVFPPLS 523
            P +    P++
Sbjct: 446 APPLPPSAPIA 456


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 28.7 bits (61), Expect = 1.3
 Identities = 20/68 (29%), Positives = 26/68 (38%), Gaps = 1/68 (1%)
 Frame = -1

Query: 627 PPFSPXLAFXXPXAHXXFPXGXPXIPXITVFPPLSEXYRSPXPNXRXXRVS-EREXGRAP 451
           PP  P      P +    P   P +P     PPLS+   +P  N      S     G AP
Sbjct: 173 PPAQPAAPVKSPPSAPSLPSAVPPMPPKVPPPPLSQ---APVANTSSRPSSFAPPAGHAP 229

Query: 450 NTQTASPR 427
           N  + SP+
Sbjct: 230 NVTSESPK 237


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 12/36 (33%), Positives = 13/36 (36%)
 Frame = -1

Query: 936  RLXGGFXPPDPXWXXXXXPGGGXPPXXXXXKSPPPP 829
            +L GG  P  P       P    PP       PPPP
Sbjct: 1676 KLFGGMAPAHPVSTPPVRPQSAAPPQMSAPTPPPPP 1711


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,680,709
Number of Sequences: 5004
Number of extensions: 16636
Number of successful extensions: 38
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 479324640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)