Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP19_F_G19
(942 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0299 - 17051570-17052474,17053542-17053755 34 0.19
04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943... 31 1.3
02_05_0686 - 30900748-30902167,30903442-30904742 31 1.3
03_02_0155 - 5974118-5974173,5974242-5974314,5974393-5974500,597... 30 2.3
08_01_0375 - 3307206-3307316,3307870-3307965,3308061-3308132,330... 30 3.1
07_03_1573 + 27829967-27830338,27830821-27831510,27831594-278317... 29 5.4
11_01_0621 - 4981070-4981136,4982906-4983825 29 7.1
11_01_0035 - 256087-256185,256287-256430,256521-256632,256777-25... 29 7.1
03_02_0455 - 8630543-8630893,8630994-8631068,8631149-8631223,863... 29 7.1
03_01_0515 - 3864796-3865425 29 7.1
09_02_0223 + 5977138-5977459,5979842-5980842 28 9.4
07_01_0479 + 3606663-3607448 28 9.4
06_01_0486 - 3455030-3455770 28 9.4
>12_02_0299 - 17051570-17052474,17053542-17053755
Length = 372
Score = 33.9 bits (74), Expect = 0.19
Identities = 20/52 (38%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
Frame = -1
Query: 651 PXGKXPXXPP-FSPXLAFXXPXAHXXFPXGXPXIPXITVFPPLSEXYRSPXP 499
P P PP FSP P FP P +P + FPPL Y SP P
Sbjct: 273 PAFPFPHLPPIFSPPSP--PPPPPPAFPFPFPQLPPLPHFPPLPSFYPSPPP 322
>04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,
9435445-9435526,9435610-9435660,9435749-9435829,
9435965-9436006,9436117-9436215,9438130-9438201,
9438557-9438680,9438850-9439723,9440274-9440456,
9440941-9442741,9442825-9443049,9443117-9443814,
9444519-9444591
Length = 1541
Score = 31.1 bits (67), Expect = 1.3
Identities = 18/64 (28%), Positives = 19/64 (29%)
Frame = -1
Query: 927 GGFXPPDPXWXXXXXPGGGXPPXXXXXKSPPPPPKGXXXGPGXXXXGXSXTXXPXXXXXP 748
GG P GG PP +PPPPP G G P P
Sbjct: 1155 GGLGGPPAPPPPAGFRGGTPPPNAHGGVAPPPPPPRGHGGVGGPPTPPGAPAPPMPPGVP 1214
Query: 747 GXXP 736
G P
Sbjct: 1215 GGPP 1218
Score = 28.3 bits (60), Expect = 9.4
Identities = 18/54 (33%), Positives = 19/54 (35%)
Frame = -1
Query: 927 GGFXPPDPXWXXXXXPGGGXPPXXXXXKSPPPPPKGXXXGPGXXXXGXSXTXXP 766
GG PP P G G PP +PP PP G GP G P
Sbjct: 1180 GGVAPPPPP--PRGHGGVGGPPTPPGAPAPPMPP-GVPGGPPPPPGGRGLPAPP 1230
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 31.1 bits (67), Expect = 1.3
Identities = 16/50 (32%), Positives = 16/50 (32%)
Frame = -1
Query: 915 PPDPXWXXXXXPGGGXPPXXXXXKSPPPPPKGXXXGPGXXXXGXSXTXXP 766
PP P G PP PPPPPKG P G P
Sbjct: 330 PPPKAAPPPPPPKGPPPPPPAKGPPPPPPPKGPSPPPPPPPGGKKGGPPP 379
Score = 29.9 bits (64), Expect = 3.1
Identities = 14/37 (37%), Positives = 14/37 (37%)
Frame = -1
Query: 915 PPDPXWXXXXXPGGGXPPXXXXXKSPPPPPKGXXXGP 805
PP P P PP PPPPPKG P
Sbjct: 353 PPPPPPPKGPSPPPPPPPGGKKGGPPPPPPKGGASRP 389
Score = 28.7 bits (61), Expect = 7.1
Identities = 13/37 (35%), Positives = 13/37 (35%)
Frame = -1
Query: 915 PPDPXWXXXXXPGGGXPPXXXXXKSPPPPPKGXXXGP 805
PP P P PP K PPPPP P
Sbjct: 328 PPPPPKAAPPPPPPKGPPPPPPAKGPPPPPPPKGPSP 364
>03_02_0155 -
5974118-5974173,5974242-5974314,5974393-5974500,
5975189-5976914,5977065-5977620,5978008-5978485
Length = 998
Score = 30.3 bits (65), Expect = 2.3
Identities = 13/33 (39%), Positives = 13/33 (39%)
Frame = -1
Query: 924 GFXPPDPXWXXXXXPGGGXPPXXXXXKSPPPPP 826
G PP P P PP SPPPPP
Sbjct: 67 GSLPPPPPRPPSFAPENALPPSSPPPPSPPPPP 99
>08_01_0375 -
3307206-3307316,3307870-3307965,3308061-3308132,
3308247-3308315,3308427-3308513,3308753-3308858,
3309118-3309237,3309327-3309406,3309497-3309878,
3310746-3310814,3311460-3312202
Length = 644
Score = 29.9 bits (64), Expect = 3.1
Identities = 25/101 (24%), Positives = 31/101 (30%)
Frame = -1
Query: 915 PPDPXWXXXXXPGGGXPPXXXXXKSPPPPPKGXXXGPGXXXXGXSXTXXPXXXXXPGXXP 736
P P + P G PP PPPPP G P + P P P
Sbjct: 33 PQQPAYGHMPPPQGAPPPFLAP---PPPPPPGP---PPPHQPQFNFGPGPPQQQQPPPPP 86
Query: 735 XIFXXPXXXSPTXXXXXPFXNXXSXGXQPXGKXPXXPPFSP 613
++ P P P+ S P P PP +P
Sbjct: 87 QMYYQPPPPPP------PYGVNSSQPPPPPPPPPSPPPSAP 121
>07_03_1573 +
27829967-27830338,27830821-27831510,27831594-27831781,
27832286-27832318,27832364-27832605,27833178-27833320,
27833649-27833825,27834104-27834256,27834639-27834694,
27834998-27835157,27835301-27835348
Length = 753
Score = 29.1 bits (62), Expect = 5.4
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = -1
Query: 867 PPXXXXXKSPPPPPKGXXXGP 805
PP ++PPPPP G GP
Sbjct: 37 PPPPPRRRTPPPPPPGSGPGP 57
>11_01_0621 - 4981070-4981136,4982906-4983825
Length = 328
Score = 28.7 bits (61), Expect = 7.1
Identities = 16/44 (36%), Positives = 19/44 (43%)
Frame = -2
Query: 482 ESVSEKXEEXPIXKPPLPXXWPIHXMXXXPPTPPPXTXNXKMXA 351
ES E + PP P P H + PPTPPP T + A
Sbjct: 113 ESCYELSLRDIVESPPPP---PPHPLPPPPPTPPPPTAEATITA 153
>11_01_0035 - 256087-256185,256287-256430,256521-256632,256777-256958,
257038-257169,257297-258589,259133-259837,260465-260549,
260604-260650,260810-260900,261838-262101,262195-262309,
262455-262570,262713-262847,262969-263036,263292-263411
Length = 1235
Score = 28.7 bits (61), Expect = 7.1
Identities = 13/37 (35%), Positives = 13/37 (35%)
Frame = -1
Query: 915 PPDPXWXXXXXPGGGXPPXXXXXKSPPPPPKGXXXGP 805
PP P PP PPPPP G GP
Sbjct: 905 PPAPSATANTASALSPPPPRPPGAPPPPPPPGKPGGP 941
>03_02_0455 -
8630543-8630893,8630994-8631068,8631149-8631223,
8631332-8631397,8631891-8631967,8632659-8633070
Length = 351
Score = 28.7 bits (61), Expect = 7.1
Identities = 24/96 (25%), Positives = 26/96 (27%)
Frame = -1
Query: 879 GGGXPPXXXXXKSPPPPPKGXXXGPGXXXXGXSXTXXPXXXXXPGXXPXIFXXPXXXSPT 700
G G PP + PPPPP+ P G P G P P P
Sbjct: 260 GSGGPPRPPPPQVPPPPPQAPPPPPPNAPMGMPPRIPPPPVG--GTQPPPPPPPLANGPP 317
Query: 699 XXXXXPFXNXXSXGXQPXGKXPXXPPFSPXLAFXXP 592
P G P PP P F P
Sbjct: 318 RSIPPP----PMTGGAMANFTPGAPPRPPMQGFPGP 349
>03_01_0515 - 3864796-3865425
Length = 209
Score = 28.7 bits (61), Expect = 7.1
Identities = 12/30 (40%), Positives = 12/30 (40%)
Frame = -1
Query: 915 PPDPXWXXXXXPGGGXPPXXXXXKSPPPPP 826
PP P P PP SPPPPP
Sbjct: 91 PPPPPAASPPPPPPSPPPPSPVKSSPPPPP 120
>09_02_0223 + 5977138-5977459,5979842-5980842
Length = 440
Score = 28.3 bits (60), Expect = 9.4
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = -2
Query: 449 IXKPPLPXXWPIHXMXXXPPTPPP 378
+ KPPLP P M PP+PPP
Sbjct: 375 VAKPPLPPP-PTMLMLPSPPSPPP 397
>07_01_0479 + 3606663-3607448
Length = 261
Score = 28.3 bits (60), Expect = 9.4
Identities = 17/51 (33%), Positives = 19/51 (37%), Gaps = 2/51 (3%)
Frame = -1
Query: 882 PGGGXPPXXXXXKSPPP--PPKGXXXGPGXXXXGXSXTXXPXXXXXPGXXP 736
PGG PP + PPP PP+ PG G P PG P
Sbjct: 198 PGGPPPPPGPFMRGPPPMGPPQVRPGMPGGPPPG-MRPGMPPPPFRPGMPP 247
>06_01_0486 - 3455030-3455770
Length = 246
Score = 28.3 bits (60), Expect = 9.4
Identities = 20/87 (22%), Positives = 26/87 (29%)
Frame = -1
Query: 873 GXPPXXXXXKSPPPPPKGXXXGPGXXXXGXSXTXXPXXXXXPGXXPXIFXXPXXXSPTXX 694
G PP PPP P+ P + P P P + P PT
Sbjct: 55 GKPPEHHHHHKPPPSPRCPSCHP--PYTPPTPRPPPTPPYVPSPPP--YVPPYIPPPTPP 110
Query: 693 XXXPFXNXXSXGXQPXGKXPXXPPFSP 613
P+ + P P PP+ P
Sbjct: 111 YVPPYIPPPTPPYVPPPTPPSPPPYVP 137
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,288,180
Number of Sequences: 37544
Number of extensions: 254411
Number of successful extensions: 1451
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 785
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1290
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2706104940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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