Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_G18
         (967 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0562 - 23307526-23307875,23308149-23308452,23308543-23308647     33   0.26 
04_01_0229 - 2897484-2900402                                           29   7.3  

>01_05_0562 - 23307526-23307875,23308149-23308452,23308543-23308647
          Length = 252

 Score = 33.5 bits (73), Expect = 0.26
 Identities = 16/38 (42%), Positives = 18/38 (47%)
 Frame = -3

Query: 446 GPKKQSASPRXGAEXXKKXKPXXPAPGPXKKXGSHXPW 333
           GPK +   P+ G     K KP  P PGP  K G   PW
Sbjct: 193 GPKPKPKPPKPGP----KPKPKPPKPGPKPKPGPPQPW 226


>04_01_0229 - 2897484-2900402
          Length = 972

 Score = 28.7 bits (61), Expect = 7.3
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = +2

Query: 407 RPPPGEXRFAFWAPFRXLH 463
           RPP  +   AFWAPF  LH
Sbjct: 82  RPPERQQLVAFWAPFLLLH 100


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,881,339
Number of Sequences: 37544
Number of extensions: 199333
Number of successful extensions: 328
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 308
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 326
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2799822860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)