Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_G15
         (920 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC186.09 |||pyruvate decarboxylase |Schizosaccharomyces pombe|...    34   0.033
SPAC1F8.07c |||pyruvate decarboxylase |Schizosaccharomyces pombe...    30   0.53 
SPBC29A3.21 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    27   3.7  
SPAC29A4.15 |||serine-tRNA ligase|Schizosaccharomyces pombe|chr ...    26   8.6  
SPBC16A3.19 |||histone acetyltransferase complex subunit Eaf7 |S...    26   8.6  
SPAC13A11.06 ||SPAC3H8.01|pyruvate decarboxylase |Schizosaccharo...    26   8.6  

>SPAC186.09 |||pyruvate decarboxylase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 572

 Score = 33.9 bits (74), Expect = 0.033
 Identities = 11/25 (44%), Positives = 19/25 (76%)
 Frame = -3

Query: 513 LIRIRSPVVMFVIGHNGYTLNVVIH 439
           ++R+  P++MF+I + GYT+ V IH
Sbjct: 463 MVRLNLPIIMFLINNRGYTIEVEIH 487


>SPAC1F8.07c |||pyruvate decarboxylase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 594

 Score = 29.9 bits (64), Expect = 0.53
 Identities = 10/25 (40%), Positives = 19/25 (76%)
 Frame = -3

Query: 513 LIRIRSPVVMFVIGHNGYTLNVVIH 439
           +IR + PV++F++ + GYT+ + IH
Sbjct: 459 MIRHKLPVLIFLLNNRGYTIEIQIH 483


>SPBC29A3.21 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 100

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = -2

Query: 322 RLLNFICTHATHTCFTKNTLNTMKKFRRENASCL*GASR 206
           R L+ + +H    CFT+ +L+ +K+   E+ +C   ASR
Sbjct: 7   RYLHNVLSHTVVFCFTEVSLHIVKQLGVESYACTVHASR 45


>SPAC29A4.15 |||serine-tRNA ligase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 450

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +3

Query: 459 CSHCVRSRTSRLEIECGLNK 518
           CS+C   ++  LEI CG+ K
Sbjct: 362 CSNCTDYQSRNLEIRCGVKK 381


>SPBC16A3.19 |||histone acetyltransferase complex subunit Eaf7
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 272

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 13/23 (56%), Positives = 14/23 (60%)
 Frame = -3

Query: 711 LTPASEPANSMSLGGNSSRSRRP 643
           + PAS PA S      SSRSRRP
Sbjct: 248 IEPASSPAASNQAIRRSSRSRRP 270


>SPAC13A11.06 ||SPAC3H8.01|pyruvate decarboxylase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 571

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 11/33 (33%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = -3

Query: 510 IRIRSPVVMFVIGHNGYTLNVVIH-IHM*YSRL 415
           IR     ++F+I ++GYT+  +IH +H  Y+ +
Sbjct: 464 IRHNLKPIIFIINNDGYTIERLIHGLHASYNEI 496


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,507,147
Number of Sequences: 5004
Number of extensions: 69549
Number of successful extensions: 166
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 468512460
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)