Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_G15
         (920 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81576-3|CAB04641.1|  534|Caenorhabditis elegans Hypothetical pr...    28   8.2  
U80452-2|AAK68180.1|  729|Caenorhabditis elegans Hypothetical pr...    28   8.2  

>Z81576-3|CAB04641.1|  534|Caenorhabditis elegans Hypothetical
           protein R10E8.4 protein.
          Length = 534

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +2

Query: 341 ISLRSRIALNSSVLGVRVRFTYCRISREYYI 433
           +S   R+ LNS ++GV VR   CRI  ++ +
Sbjct: 15  VSSALRVLLNSQIIGVTVRVHDCRILFDFVV 45


>U80452-2|AAK68180.1|  729|Caenorhabditis elegans Hypothetical
           protein C16C8.2 protein.
          Length = 729

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = +3

Query: 171 VSCAVCNGVTTCRD 212
           VSC  CNG+TTC D
Sbjct: 90  VSCDFCNGITTCID 103


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,834,257
Number of Sequences: 27780
Number of extensions: 404618
Number of successful extensions: 857
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 824
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 857
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2360254050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)