Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP19_F_G13
(985 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 33 0.059
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 33 0.082
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 31 0.19
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 26 9.4
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 32.7 bits (71), Expect = 0.082
Identities = 13/30 (43%), Positives = 13/30 (43%)
Frame = +3
Query: 750 PPPPPPXXXXXXXXPPPPPXXXXXXXXKKK 839
PPPPPP PPPPP K K
Sbjct: 10 PPPPPPPGFEPPSQPPPPPPPGYVKKRKNK 39
Score = 28.7 bits (61), Expect = 1.3
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = +3
Query: 750 PPPPPPXXXXXXXXPPPPP 806
PPPPPP PPPP
Sbjct: 9 PPPPPPPPGFEPPSQPPPP 27
Score = 28.3 bits (60), Expect(2) = 0.059
Identities = 11/24 (45%), Positives = 11/24 (45%)
Frame = +1
Query: 469 PPXXXXXXPPPGXF*KKKXPPPPP 540
PP PPP F PPPPP
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPP 28
Score = 27.5 bits (58), Expect = 3.1
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = +1
Query: 493 PPPGXF*KKKXPPPPPXG 546
PPPG + PPPPP G
Sbjct: 14 PPPGFEPPSQPPPPPPPG 31
Score = 27.1 bits (57), Expect = 4.1
Identities = 10/24 (41%), Positives = 11/24 (45%)
Frame = +1
Query: 736 GXXXXPPPPPXXKXXXXXXXPPPP 807
G PPPPP + PPPP
Sbjct: 7 GNPPPPPPPPGFEPPSQPPPPPPP 30
Score = 25.8 bits (54), Expect = 9.4
Identities = 11/33 (33%), Positives = 12/33 (36%)
Frame = +3
Query: 753 PPPPPXXXXXXXXPPPPPXXXXXXXXKKKXXXP 851
PPPPP PPP K+K P
Sbjct: 9 PPPPPPPPGFEPPSQPPPPPPPGYVKKRKNKTP 41
Score = 23.4 bits (48), Expect(2) = 0.059
Identities = 8/11 (72%), Positives = 8/11 (72%)
Frame = +1
Query: 646 PPPPPPXXKKK 678
PPPPPP KK
Sbjct: 25 PPPPPPGYVKK 35
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 32.7 bits (71), Expect = 0.082
Identities = 13/36 (36%), Positives = 14/36 (38%)
Frame = +3
Query: 750 PPPPPPXXXXXXXXPPPPPXXXXXXXXKKKXXXPPP 857
PPPPPP PPPPP + P P
Sbjct: 762 PPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAP 797
Score = 31.9 bits (69), Expect = 0.14
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = +3
Query: 750 PPPPPPXXXXXXXXPPPPP 806
PPPPPP PPPPP
Sbjct: 761 PPPPPPPPGVAGAGPPPPP 779
Score = 30.3 bits (65), Expect = 0.44
Identities = 15/52 (28%), Positives = 15/52 (28%)
Frame = +2
Query: 755 PPPPXXXXXXXXPXPPPXXXXXXXXXKKXXXPPPXXXXXXXKKKNXXPPPPP 910
PPPP P P P PPP PPPPP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783
Score = 28.7 bits (61), Expect = 1.3
Identities = 16/54 (29%), Positives = 16/54 (29%)
Frame = +1
Query: 646 PPPPPPXXKKKXXXXXXXXXXXXXXXXXXXGXXXXPPPPPXXKXXXXXXXPPPP 807
PPPPPP G PPPPP PPPP
Sbjct: 732 PPPPPPAV---IVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782
Score = 27.1 bits (57), Expect = 4.1
Identities = 12/36 (33%), Positives = 12/36 (33%)
Frame = +3
Query: 750 PPPPPPXXXXXXXXPPPPPXXXXXXXXKKKXXXPPP 857
P P PP PPPPP PPP
Sbjct: 748 PIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 31.5 bits (68), Expect = 0.19
Identities = 13/35 (37%), Positives = 14/35 (40%)
Frame = +1
Query: 880 KKKXXPPPPPXXXXXXXXXXXXXXXXXXXPPPPPP 984
KK+ PPPPP PPPPPP
Sbjct: 308 KKRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPP 342
Score = 27.9 bits (59), Expect = 2.3
Identities = 12/36 (33%), Positives = 13/36 (36%)
Frame = +1
Query: 877 KKKKXXPPPPPXXXXXXXXXXXXXXXXXXXPPPPPP 984
KK+ PPPP PPPPPP
Sbjct: 308 KKRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPP 343
Score = 27.5 bits (58), Expect = 3.1
Identities = 11/30 (36%), Positives = 11/30 (36%)
Frame = +1
Query: 895 PPPPPXXXXXXXXXXXXXXXXXXXPPPPPP 984
PPPPP PPPPPP
Sbjct: 337 PPPPPPPRSNAAGSIPLPPQGRSAPPPPPP 366
Score = 25.8 bits (54), Expect = 9.4
Identities = 9/18 (50%), Positives = 9/18 (50%)
Frame = +3
Query: 750 PPPPPPXXXXXXXXPPPP 803
PPPPPP PPP
Sbjct: 361 PPPPPPRSAPSTGRQPPP 378
Score = 23.8 bits (49), Expect(2) = 1.9
Identities = 14/54 (25%), Positives = 17/54 (31%)
Frame = +1
Query: 646 PPPPPPXXKKKXXXXXXXXXXXXXXXXXXXGXXXXPPPPPXXKXXXXXXXPPPP 807
PPPPPP ++ PPPPP + P PP
Sbjct: 311 PPPPPPPSRRNRGKPPIGNGS---------SNSSLPPPPPPPRSNAAGSIPLPP 355
Score = 22.6 bits (46), Expect(2) = 1.9
Identities = 7/9 (77%), Positives = 8/9 (88%)
Frame = +1
Query: 514 KKKXPPPPP 540
KK+ PPPPP
Sbjct: 308 KKRPPPPPP 316
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 25.8 bits (54), Expect = 9.4
Identities = 9/18 (50%), Positives = 9/18 (50%)
Frame = +3
Query: 750 PPPPPPXXXXXXXXPPPP 803
PPPPPP P PP
Sbjct: 5 PPPPPPAPAPAAAAPAPP 22
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,915,627
Number of Sequences: 5004
Number of extensions: 31595
Number of successful extensions: 259
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 507285244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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