Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_G08
         (936 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    25   0.99 
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       24   1.7  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   9.2  

>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 25.0 bits (52), Expect = 0.99
 Identities = 12/29 (41%), Positives = 12/29 (41%)
 Frame = -3

Query: 316 SGGGGXXFXXPGVXFVXGGXXGGGGXGXG 230
           S  GG      G   V G   GGGG G G
Sbjct: 25  SSAGGVVTGASGGSIVVGANNGGGGGGLG 53


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 24.2 bits (50), Expect = 1.7
 Identities = 12/36 (33%), Positives = 14/36 (38%), Gaps = 2/36 (5%)
 Frame = +1

Query: 832 PPPRXXXXXTPXXXQXA--PXPXXPPPXGAPXXXPP 933
           P P+     +P   Q    P P   PP G P   PP
Sbjct: 21  PGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPP 56



 Score = 23.4 bits (48), Expect = 3.0
 Identities = 9/22 (40%), Positives = 9/22 (40%)
 Frame = +1

Query: 577 PPPPXXGGXXXXXPPPPPXGPP 642
           P  P  G        PPP GPP
Sbjct: 31  PQAPQRGSPPNPSQGPPPGGPP 52



 Score = 22.2 bits (45), Expect = 7.0
 Identities = 11/41 (26%), Positives = 11/41 (26%)
 Frame = +2

Query: 548 PPPGGEXXXXXPPQXXGGXXXXXPPPPPXAPPPXXXXXTXP 670
           P  G       P Q         PP P   PPP       P
Sbjct: 16  PSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPP 56


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 9.2
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +3

Query: 219  RRXAPXPXPPPP 254
            R+  P P PPPP
Sbjct: 1351 RQQQPPPPPPPP 1362


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.317    0.152    0.549 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 265,272
Number of Sequences: 438
Number of extensions: 12182
Number of successful extensions: 11
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30597567
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)