Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_G05
         (958 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    33   0.045
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    30   0.42 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    29   0.97 
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    27   3.9  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 33.5 bits (73), Expect = 0.045
 Identities = 17/52 (32%), Positives = 20/52 (38%)
 Frame = +3

Query: 414 PXXSXXKXXPPPPXPPXFFXGXGGGXXXXXXXQPPPPPPXGXGXXFFFPPPP 569
           P  +     PPPP PP    G G          PPPPP    G   ++ P P
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAG------PPPPPPPPPAVSAGGSRYYAPAP 797



 Score = 29.1 bits (62), Expect = 0.97
 Identities = 16/47 (34%), Positives = 16/47 (34%), Gaps = 4/47 (8%)
 Frame = +3

Query: 441 PPPPXPPXFFXGXGGGXXXXXXXQP----PPPPPXGXGXXFFFPPPP 569
           PPPP P                  P    PPPPP   G     PPPP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPP 778



 Score = 27.9 bits (59), Expect = 2.2
 Identities = 13/39 (33%), Positives = 13/39 (33%)
 Frame = +3

Query: 411 PPXXSXXKXXPPPPXPPXFFXGXGGGXXXXXXXQPPPPP 527
           PP        PPPP PP      GG        Q  P P
Sbjct: 765 PPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAPQAEPEP 803


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 30.3 bits (65), Expect = 0.42
 Identities = 15/32 (46%), Positives = 15/32 (46%)
 Frame = +3

Query: 441 PPPPXPPXFFXGXGGGXXXXXXXQPPPPPPXG 536
           PPPP PP F              QPPPPPP G
Sbjct: 10  PPPPPPPGF----------EPPSQPPPPPPPG 31



 Score = 28.7 bits (61), Expect = 1.3
 Identities = 11/19 (57%), Positives = 11/19 (57%)
 Frame = +3

Query: 513 PPPPPPXGXGXXFFFPPPP 569
           PPPPPP G       PPPP
Sbjct: 10  PPPPPPPGFEPPSQPPPPP 28


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 29.1 bits (62), Expect = 0.97
 Identities = 18/49 (36%), Positives = 18/49 (36%), Gaps = 3/49 (6%)
 Frame = +3

Query: 432 KXXPPPPXPPXFFXGXGG---GXXXXXXXQPPPPPPXGXGXXFFFPPPP 569
           K  PPPP PP      G    G        PPPPPP         P PP
Sbjct: 308 KKRPPPPPPPS-RRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPP 355



 Score = 28.7 bits (61), Expect = 1.3
 Identities = 14/42 (33%), Positives = 14/42 (33%)
 Frame = +3

Query: 444 PPPXPPXFFXGXGGGXXXXXXXQPPPPPPXGXGXXFFFPPPP 569
           PPP PP      G           PPPPP          PPP
Sbjct: 337 PPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPP 378


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 21/66 (31%), Positives = 21/66 (31%), Gaps = 1/66 (1%)
 Frame = -1

Query: 706 GXXGAXXFFXGXPPP-PXGGGXXPXGGGGGXXPXXXXXXXXXXXXXXGGGGKKKXXPXPX 530
           G  G      G PPP P G G     GG G                 GG G     P   
Sbjct: 188 GGFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGF 247

Query: 529 GGGGGG 512
           GGG GG
Sbjct: 248 GGGLGG 253



 Score = 25.8 bits (54), Expect = 9.0
 Identities = 27/91 (29%), Positives = 27/91 (29%), Gaps = 2/91 (2%)
 Frame = -1

Query: 655 GGGXXPXGGGGGXXPXXXXXXXXXXXXXXGGGGKKKXXPXPXGGGGGG--XXXXXXXXPP 482
           GGG    GGG G  P              GG G         GGG GG           P
Sbjct: 187 GGGFGGFGGGSGGPP--PGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGP 244

Query: 481 PXPXKKXGGXGGGGXXFXXLXXGGPXAPXPP 389
                  GG GGG   F     GGP     P
Sbjct: 245 GGFGGGLGGFGGGPGGF----GGGPGGHGGP 271


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,587,927
Number of Sequences: 5004
Number of extensions: 22648
Number of successful extensions: 131
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 489310570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)