Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP19_F_G03
(1094 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z79596-1|CAB01857.1| 830|Caenorhabditis elegans Hypothetical pr... 33 0.27
L29031-1|AAB72228.2| 830|Caenorhabditis elegans dynamin protein. 33 0.27
Z79596-2|CAC42251.1| 838|Caenorhabditis elegans Hypothetical pr... 33 0.36
AF167982-1|AAD50438.1| 838|Caenorhabditis elegans dynamin protein. 33 0.36
Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical pr... 33 0.47
AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical ... 31 1.9
AF025467-2|AAN65301.1| 505|Caenorhabditis elegans Hypothetical ... 31 1.9
AF025467-1|AAB71039.2| 528|Caenorhabditis elegans Hypothetical ... 31 1.9
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 24 3.6
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 24 3.6
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 24 3.7
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 29 5.8
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 29 5.8
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 29 5.8
>Z79596-1|CAB01857.1| 830|Caenorhabditis elegans Hypothetical
protein C02C6.1a protein.
Length = 830
Score = 33.5 bits (73), Expect = 0.27
Identities = 17/47 (36%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
Frame = -2
Query: 346 PPXGGXFXPPPPNFXPPXGXPPFFXGGXPXKXKXK-XRGXPKKKISP 209
PP GG PPPP PP G P G P + G P ++P
Sbjct: 782 PPRGGPGAPPPPGMRPPPGAPGGGGGMYPPLIPTRPGPGGPPPNMAP 828
>L29031-1|AAB72228.2| 830|Caenorhabditis elegans dynamin protein.
Length = 830
Score = 33.5 bits (73), Expect = 0.27
Identities = 17/47 (36%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
Frame = -2
Query: 346 PPXGGXFXPPPPNFXPPXGXPPFFXGGXPXKXKXK-XRGXPKKKISP 209
PP GG PPPP PP G P G P + G P ++P
Sbjct: 782 PPRGGPGAPPPPGMRPPPGAPGGGGGMYPPLIPTRPGPGGPPPNMAP 828
>Z79596-2|CAC42251.1| 838|Caenorhabditis elegans Hypothetical
protein C02C6.1b protein.
Length = 838
Score = 33.1 bits (72), Expect = 0.36
Identities = 12/21 (57%), Positives = 12/21 (57%)
Frame = -2
Query: 346 PPXGGXFXPPPPNFXPPXGXP 284
PP GG PPPP PP G P
Sbjct: 782 PPRGGPGAPPPPGMRPPPGAP 802
>AF167982-1|AAD50438.1| 838|Caenorhabditis elegans dynamin protein.
Length = 838
Score = 33.1 bits (72), Expect = 0.36
Identities = 12/21 (57%), Positives = 12/21 (57%)
Frame = -2
Query: 346 PPXGGXFXPPPPNFXPPXGXP 284
PP GG PPPP PP G P
Sbjct: 782 PPRGGPGAPPPPGMRPPPGAP 802
>Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical
protein T24B8.4 protein.
Length = 866
Score = 32.7 bits (71), Expect = 0.47
Identities = 15/36 (41%), Positives = 16/36 (44%)
Frame = -2
Query: 367 KKNFXXFPPXGGXFXPPPPNFXPPXGXPPFFXGGXP 260
K +F PP F PPPP PP F GG P
Sbjct: 60 KPSFFIPPPVPNGFIPPPPGPGGIPPPPPMFAGGIP 95
Score = 30.3 bits (65), Expect = 2.5
Identities = 13/29 (44%), Positives = 13/29 (44%)
Frame = -2
Query: 346 PPXGGXFXPPPPNFXPPXGXPPFFXGGXP 260
PP G PPPP F PP GG P
Sbjct: 77 PPGPGGIPPPPPMFAGGIPPPPPMMGGIP 105
Score = 29.9 bits (64), Expect = 3.3
Identities = 15/36 (41%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Frame = -2
Query: 346 PPXGGXFXPPPPNF-XPPXGXPPFFXGGXPXKXKXK 242
PP G PPPP F PP PP G P + K
Sbjct: 98 PPMMGGIPPPPPMFGAPPPPPPPSGLGVAPQPPRPK 133
>AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical
protein Y63D3A.5 protein.
Length = 486
Score = 30.7 bits (66), Expect = 1.9
Identities = 15/30 (50%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Frame = -2
Query: 346 PPXG-GXFXPPPPNFXPPXGXPPFFXGGXP 260
PP G G + PPP F PP G PP G P
Sbjct: 437 PPGGPGAYGPPPTGF-PPVGAPPPGAAGAP 465
>AF025467-2|AAN65301.1| 505|Caenorhabditis elegans Hypothetical
protein R148.5b protein.
Length = 505
Score = 30.7 bits (66), Expect = 1.9
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = -2
Query: 346 PPXGGXFXPPPPNFXPPXGXPPF 278
PP G F PPPP+F PPF
Sbjct: 298 PPPRGHFPPPPPHFMGRGMPPPF 320
Score = 29.5 bits (63), Expect = 4.4
Identities = 15/34 (44%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Frame = -2
Query: 358 FXXFPPXGGXFXPPPPNFXPPXGXPPFFXG-GXP 260
+ PP G F PPP PP PP F G G P
Sbjct: 286 YAMMPPPFGFFPPPPRGHFPP--PPPHFMGRGMP 317
>AF025467-1|AAB71039.2| 528|Caenorhabditis elegans Hypothetical
protein R148.5a protein.
Length = 528
Score = 30.7 bits (66), Expect = 1.9
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = -2
Query: 346 PPXGGXFXPPPPNFXPPXGXPPF 278
PP G F PPPP+F PPF
Sbjct: 298 PPPRGHFPPPPPHFMGRGMPPPF 320
Score = 29.5 bits (63), Expect = 4.4
Identities = 15/34 (44%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Frame = -2
Query: 358 FXXFPPXGGXFXPPPPNFXPPXGXPPFFXG-GXP 260
+ PP G F PPP PP PP F G G P
Sbjct: 286 YAMMPPPFGFFPPPPRGHFPP--PPPHFMGRGMP 317
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 24.2 bits (50), Expect(2) = 3.6
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = -3
Query: 525 PPPPXGGXEXKPP 487
PPPP GG + PP
Sbjct: 773 PPPPPGGFKGGPP 785
Score = 23.8 bits (49), Expect(2) = 3.6
Identities = 8/11 (72%), Positives = 8/11 (72%)
Frame = -3
Query: 537 GGAXPPPPXGG 505
GG PPPP GG
Sbjct: 740 GGPPPPPPPGG 750
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 24.2 bits (50), Expect(2) = 3.6
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = -3
Query: 525 PPPPXGGXEXKPP 487
PPPP GG + PP
Sbjct: 773 PPPPPGGFKGGPP 785
Score = 23.8 bits (49), Expect(2) = 3.6
Identities = 8/11 (72%), Positives = 8/11 (72%)
Frame = -3
Query: 537 GGAXPPPPXGG 505
GG PPPP GG
Sbjct: 740 GGPPPPPPPGG 750
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 24.2 bits (50), Expect(2) = 3.7
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = -3
Query: 525 PPPPXGGXEXKPP 487
PPPP GG + PP
Sbjct: 356 PPPPPGGFKGGPP 368
Score = 23.8 bits (49), Expect(2) = 3.7
Identities = 8/11 (72%), Positives = 8/11 (72%)
Frame = -3
Query: 537 GGAXPPPPXGG 505
GG PPPP GG
Sbjct: 323 GGPPPPPPPGG 333
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 29.1 bits (62), Expect = 5.8
Identities = 17/46 (36%), Positives = 18/46 (39%)
Frame = -2
Query: 346 PPXGGXFXPPPPNFXPPXGXPPFFXGGXPXKXKXKXRGXPKKKISP 209
PP G PPPP PP G PP G P P + SP
Sbjct: 232 PPAGSP--PPPP---PPKGSPPLAGSGSPPPPPAAGSPPPPRTGSP 272
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 29.1 bits (62), Expect = 5.8
Identities = 17/46 (36%), Positives = 18/46 (39%)
Frame = -2
Query: 346 PPXGGXFXPPPPNFXPPXGXPPFFXGGXPXKXKXKXRGXPKKKISP 209
PP G PPPP PP G PP G P P + SP
Sbjct: 253 PPAGSP--PPPP---PPKGSPPLAGSGSPPPPPAAGSPPPPRTGSP 293
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 29.1 bits (62), Expect = 5.8
Identities = 17/46 (36%), Positives = 18/46 (39%)
Frame = -2
Query: 346 PPXGGXFXPPPPNFXPPXGXPPFFXGGXPXKXKXKXRGXPKKKISP 209
PP G PPPP PP G PP G P P + SP
Sbjct: 238 PPAGSP--PPPP---PPKGSPPLAGSGSPPPPPAAGSPPPPRTGSP 278
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,367,480
Number of Sequences: 27780
Number of extensions: 315941
Number of successful extensions: 1381
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 475
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1197
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2950351116
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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