Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_G02
         (934 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    29   0.94 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    28   1.6  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    28   2.2  
SPBC409.07c |wis1|spc2, smf2|MAP kinase kinase Wis1|Schizosaccha...    27   3.8  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    26   8.7  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   8.7  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 29.1 bits (62), Expect = 0.94
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = -3

Query: 305 PLXPPPXXXGGPPXPPXP 252
           P+ PP    GGPP PP P
Sbjct: 750 PVPPPAPIMGGPPPPPPP 767



 Score = 27.9 bits (59), Expect = 2.2
 Identities = 11/23 (47%), Positives = 11/23 (47%)
 Frame = -3

Query: 314 PQKPLXPPPXXXGGPPXPPXPFP 246
           P  P  PP     GPP PP P P
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPPPP 783



 Score = 26.2 bits (55), Expect = 6.6
 Identities = 14/47 (29%), Positives = 14/47 (29%)
 Frame = -2

Query: 387 PPPGXXPXXPPPXGXPXSXXXXXXXPKTPFXPPXSXGGAPXPPXXFP 247
           PPP      P P   P            P  PP    GA  PP   P
Sbjct: 735 PPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 14/32 (43%), Positives = 14/32 (43%)
 Frame = -3

Query: 335 AXXPPXXPQKPLXPPPXXXGGPPXPPXPFPXG 240
           A  PP  P  P  PPP     P  PP P P G
Sbjct: 2   ASLPPGNPPPP--PPPPGFEPPSQPPPPPPPG 31


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 14/48 (29%), Positives = 15/48 (31%)
 Frame = -3

Query: 389  SPPRGXXRFXPXXXGXXXAXXPPXXPQKPLXPPPXXXGGPPXPPXPFP 246
            +PP       P          PP     P   PP   G P  PP P P
Sbjct: 1689 TPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLP 1736


>SPBC409.07c |wis1|spc2, smf2|MAP kinase kinase
           Wis1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 605

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = -3

Query: 278 GGPPXPPXPFPXG 240
           G PP PP PFP G
Sbjct: 128 GSPPTPPGPFPGG 140


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 9/22 (40%), Positives = 10/22 (45%)
 Frame = -3

Query: 326 PPXXPQKPLXPPPXXXGGPPXP 261
           P   P +P  PPP     PP P
Sbjct: 140 PTSAPPRPSIPPPSPASAPPIP 161


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 11/25 (44%), Positives = 12/25 (48%)
 Frame = -3

Query: 326 PPXXPQKPLXPPPXXXGGPPXPPXP 252
           PP  P  P+ PP    G P  PP P
Sbjct: 447 PPLPPSAPIAPP-LPAGMPAAPPLP 470


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,338,198
Number of Sequences: 5004
Number of extensions: 15362
Number of successful extensions: 91
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 473333082
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)