Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_G02
         (934 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ438610-1|CAD27473.1|  838|Anopheles gambiae putative microtubu...    25   0.48 
DQ655702-1|ABG45862.1|  889|Anopheles gambiae Jxc1 protein.            25   3.3  

>AJ438610-1|CAD27473.1|  838|Anopheles gambiae putative microtubule
           binding protein protein.
          Length = 838

 Score = 24.6 bits (51), Expect = 4.3
 Identities = 12/38 (31%), Positives = 12/38 (31%)
 Frame = -2

Query: 387 PPPGXXPXXPPPXGXPXSXXXXXXXPKTPFXPPXSXGG 274
           PPPG  P  P P              K  F  P   GG
Sbjct: 495 PPPGGRPNAPNPSSAVTPGGGRAEGDKVTFQIPNGGGG 532



 Score = 24.2 bits (50), Expect(2) = 0.48
 Identities = 16/67 (23%), Positives = 18/67 (26%)
 Frame = -3

Query: 470 PPPPGXXRXFXXXXXXXXXPRXGXXKGSPPRGXXRFXPXXXGXXXAXXPPXXPQKPLXPP 291
           P PP     +          R     G+ P       P          PP   Q P   P
Sbjct: 209 PQPPRPGGMYPQPPGVPMPMRPQMPPGAVPGMQPGMQPRPPSAQGMQRPPMMGQPPPIRP 268

Query: 290 PXXXGGP 270
           P   GGP
Sbjct: 269 PNPMGGP 275



 Score = 21.8 bits (44), Expect(2) = 0.48
 Identities = 8/17 (47%), Positives = 8/17 (47%)
 Frame = -3

Query: 290 PXXXGGPPXPPXPFPXG 240
           P    GPP PP P   G
Sbjct: 291 PSGMVGPPRPPMPMQGG 307


>DQ655702-1|ABG45862.1|  889|Anopheles gambiae Jxc1 protein.
          Length = 889

 Score = 25.0 bits (52), Expect = 3.3
 Identities = 11/28 (39%), Positives = 11/28 (39%)
 Frame = -3

Query: 323 PXXPQKPLXPPPXXXGGPPXPPXPFPXG 240
           P     P  PPP   G PP P    P G
Sbjct: 577 PNAQPPPAPPPPPPMGPPPSPLAGGPLG 604



 Score = 21.4 bits (43), Expect(2) = 4.7
 Identities = 11/41 (26%), Positives = 12/41 (29%)
 Frame = -2

Query: 384 PPGXXPXXPPPXGXPXSXXXXXXXPKTPFXPPXSXGGAPXP 262
           PP   P  PPP              + P       GGA  P
Sbjct: 585 PPPPPPMGPPPSPLAGGPLGGPAGSRPPLPNLLGFGGAAPP 625



 Score = 21.0 bits (42), Expect(2) = 4.7
 Identities = 7/12 (58%), Positives = 7/12 (58%)
 Frame = -2

Query: 483 PKXXPPPPRXGP 448
           P   PPPP  GP
Sbjct: 582 PPAPPPPPPMGP 593


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 394,971
Number of Sequences: 2352
Number of extensions: 6189
Number of successful extensions: 22
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 563,979
effective HSP length: 64
effective length of database: 413,451
effective search space used: 101708946
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)