Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP19_F_F24
(868 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 36 0.010
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 33 0.040
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 29 0.86
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 26 6.0
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 26 8.0
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 35.5 bits (78), Expect = 0.010
Identities = 12/18 (66%), Positives = 12/18 (66%)
Frame = +1
Query: 625 PPPPPXXXGGGGXPPPPP 678
PPPPP G G PPPPP
Sbjct: 763 PPPPPPGVAGAGPPPPPP 780
Score = 34.7 bits (76), Expect = 0.017
Identities = 12/18 (66%), Positives = 12/18 (66%)
Frame = +1
Query: 625 PPPPPXXXGGGGXPPPPP 678
PPPPP G G PPPPP
Sbjct: 764 PPPPPGVAGAGPPPPPPP 781
Score = 31.9 bits (69), Expect = 0.12
Identities = 11/18 (61%), Positives = 11/18 (61%)
Frame = +1
Query: 625 PPPPPXXXGGGGXPPPPP 678
PPPPP G PPPPP
Sbjct: 762 PPPPPPPGVAGAGPPPPP 779
Score = 31.9 bits (69), Expect = 0.12
Identities = 11/18 (61%), Positives = 11/18 (61%)
Frame = +2
Query: 623 PPPPPXXXGGGGGXPPPP 676
PPPPP G G PPPP
Sbjct: 763 PPPPPPGVAGAGPPPPPP 780
Score = 31.5 bits (68), Expect = 0.16
Identities = 11/18 (61%), Positives = 11/18 (61%)
Frame = +2
Query: 623 PPPPPXXXGGGGGXPPPP 676
PPPPP G G PPPP
Sbjct: 761 PPPPPPPPGVAGAGPPPP 778
Score = 31.5 bits (68), Expect = 0.16
Identities = 11/18 (61%), Positives = 11/18 (61%)
Frame = +2
Query: 623 PPPPPXXXGGGGGXPPPP 676
PPPPP G G PPPP
Sbjct: 762 PPPPPPPGVAGAGPPPPP 779
Score = 31.1 bits (67), Expect = 0.21
Identities = 11/18 (61%), Positives = 11/18 (61%)
Frame = +2
Query: 623 PPPPPXXXGGGGGXPPPP 676
PPPPP G G PPPP
Sbjct: 764 PPPPPGVAGAGPPPPPPP 781
Score = 29.9 bits (64), Expect = 0.49
Identities = 11/18 (61%), Positives = 11/18 (61%)
Frame = +1
Query: 625 PPPPPXXXGGGGXPPPPP 678
P PPP GG PPPPP
Sbjct: 750 PVPPPAPIMGGPPPPPPP 767
Score = 27.9 bits (59), Expect = 2.0
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = +1
Query: 628 PPPPXXXGGGGXPPPPP 678
PPP GG PPPPP
Sbjct: 752 PPPAPIMGGPPPPPPPP 768
Score = 26.2 bits (55), Expect = 6.0
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = +2
Query: 623 PPPPPXXXGGGGGXPPPP 676
P PPP GG PPPP
Sbjct: 750 PVPPPAPIMGGPPPPPPP 767
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 33.5 bits (73), Expect = 0.040
Identities = 13/26 (50%), Positives = 14/26 (53%)
Frame = +1
Query: 625 PPPPPXXXGGGGXPPPPPXXXXKKKK 702
PPPPP PPPPP KK+K
Sbjct: 12 PPPPPGFEPPSQPPPPPPPGYVKKRK 37
Score = 30.7 bits (66), Expect = 0.28
Identities = 12/26 (46%), Positives = 13/26 (50%)
Frame = +1
Query: 625 PPPPPXXXGGGGXPPPPPXXXXKKKK 702
PPPPP PPPPP KK+
Sbjct: 11 PPPPPPGFEPPSQPPPPPPPGYVKKR 36
Score = 29.9 bits (64), Expect = 0.49
Identities = 12/26 (46%), Positives = 13/26 (50%)
Frame = +2
Query: 623 PPPPPXXXGGGGGXPPPPXXXXKKKK 700
PPPPP PPPP KK+K
Sbjct: 12 PPPPPGFEPPSQPPPPPPPGYVKKRK 37
Score = 26.2 bits (55), Expect = 6.0
Identities = 11/27 (40%), Positives = 12/27 (44%)
Frame = +2
Query: 623 PPPPPXXXGGGGGXPPPPXXXXKKKKK 703
PPPP PPPP K+K K
Sbjct: 13 PPPPGFEPPSQPPPPPPPGYVKKRKNK 39
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 29.1 bits (62), Expect = 0.86
Identities = 12/23 (52%), Positives = 12/23 (52%)
Frame = -3
Query: 692 FXXXXGGGGGXPPPPXXXGGGGG 624
F GG GG PP P GG GG
Sbjct: 190 FGGFGGGSGGPPPGPGGFGGFGG 212
Score = 28.7 bits (61), Expect = 1.1
Identities = 11/18 (61%), Positives = 11/18 (61%)
Frame = -2
Query: 675 GGGGXPPPPPXXXGGGGG 622
GG G PPP P GG GG
Sbjct: 195 GGSGGPPPGPGGFGGFGG 212
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 26.2 bits (55), Expect = 6.0
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = +1
Query: 613 KKXXPPPPPXXXGGGGXPP 669
KK PPPPP G PP
Sbjct: 308 KKRPPPPPPPSRRNRGKPP 326
Score = 26.2 bits (55), Expect = 6.0
Identities = 9/18 (50%), Positives = 9/18 (50%)
Frame = +2
Query: 623 PPPPPXXXGGGGGXPPPP 676
PPPPP G P PP
Sbjct: 338 PPPPPPRSNAAGSIPLPP 355
Score = 25.8 bits (54), Expect = 8.0
Identities = 9/21 (42%), Positives = 10/21 (47%)
Frame = +2
Query: 614 KKXPPPPPXXXGGGGGXPPPP 676
+ PPPPP G PPP
Sbjct: 358 RSAPPPPPPRSAPSTGRQPPP 378
>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 188
Score = 25.8 bits (54), Expect = 8.0
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = +1
Query: 106 FFXXFFFXFFFFXPXKXF 159
FF FFF FFFF + F
Sbjct: 74 FFYWFFFFFFFFSHCRRF 91
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,686,006
Number of Sequences: 5004
Number of extensions: 22692
Number of successful extensions: 223
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 432473040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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