Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_F23
         (899 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx mori|...    38   0.46 
UniRef50_UPI00006CFD08 Cluster: hypothetical protein TTHERM_0060...    36   1.9  
UniRef50_Q8YWP2 Cluster: Alr1562 protein; n=2; Nostoc|Rep: Alr15...    35   3.3  
UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bomb...    35   3.3  
UniRef50_Q22YG4 Cluster: Putative uncharacterized protein; n=1; ...    34   4.3  
UniRef50_Q22RM5 Cluster: Putative uncharacterized protein; n=4; ...    34   4.3  
UniRef50_A0NT92 Cluster: Putative uncharacterized protein; n=1; ...    33   7.5  
UniRef50_Q97L28 Cluster: DNA polymerase III epsilon subunit (3'-...    33   9.9  
UniRef50_Q86IK7 Cluster: Similar to Arabidopsis thaliana (Mouse-...    33   9.9  
UniRef50_Q2NI66 Cluster: Putative uncharacterized protein; n=1; ...    33   9.9  

>UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx
           mori|Rep: NADPH oxidoreductase - Bombyx mori (Silk moth)
          Length = 191

 Score = 37.5 bits (83), Expect = 0.46
 Identities = 14/15 (93%), Positives = 14/15 (93%)
 Frame = +1

Query: 430 WVDEFTAHLVLSGYW 474
           WVDE TAHLVLSGYW
Sbjct: 159 WVDELTAHLVLSGYW 173


>UniRef50_UPI00006CFD08 Cluster: hypothetical protein
           TTHERM_00600620; n=1; Tetrahymena thermophila SB210|Rep:
           hypothetical protein TTHERM_00600620 - Tetrahymena
           thermophila SB210
          Length = 1431

 Score = 35.5 bits (78), Expect = 1.9
 Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
 Frame = +2

Query: 257 DIIGDIS--EAKNLLVEKDLIHNLRKEKQSNKKSRANQIGIKNKHCKIRNEEINRS 418
           DI+ DIS  EAKN   + + I   RK K+  +    NQ+ + N  C ++N+++N S
Sbjct: 448 DILNDISCLEAKNKDYQNEQIGKRRKSKRRQEMEGLNQVQMVNNSC-LKNQQLNLS 502


>UniRef50_Q8YWP2 Cluster: Alr1562 protein; n=2; Nostoc|Rep: Alr1562
           protein - Anabaena sp. (strain PCC 7120)
          Length = 344

 Score = 34.7 bits (76), Expect = 3.3
 Identities = 20/71 (28%), Positives = 35/71 (49%)
 Frame = +3

Query: 426 VMGGRVHSPPSVKWLLATYQV*LQRLPHPLNRNALLLHGRNRQGGGTYPRGLTIGLTTSK 605
           V G     P S++ + ATY    + L HPLN N L+   +         RG+++ L+ ++
Sbjct: 229 VFGSITELPSSLELVQATYDALGKPLEHPLNINQLITASKQVIANWKNKRGVSVQLSEAE 288

Query: 606 VKYLYTILQLH 638
           +  L T ++ H
Sbjct: 289 LADLLTDVETH 299


>UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bombyx
           mori (Silk moth)
          Length = 782

 Score = 34.7 bits (76), Expect = 3.3
 Identities = 12/14 (85%), Positives = 13/14 (92%)
 Frame = +2

Query: 560 WYLPARTHNRSYHQ 601
           WYLPARTH RSYH+
Sbjct: 572 WYLPARTHKRSYHR 585


>UniRef50_Q22YG4 Cluster: Putative uncharacterized protein; n=1;
            Tetrahymena thermophila SB210|Rep: Putative
            uncharacterized protein - Tetrahymena thermophila SB210
          Length = 999

 Score = 34.3 bits (75), Expect = 4.3
 Identities = 23/95 (24%), Positives = 44/95 (46%), Gaps = 5/95 (5%)
 Frame = +2

Query: 155  NSNVKLETQIDLKTEIKTXXXXXXANDFQTALDIDIIGDISEAKNLLVEKDLIHNLRKEK 334
            N+N  + TQ D+K E +        N  Q  + I++I D     N+   ++ + N +K++
Sbjct: 744  NNNQDINTQNDIKNEPQIPFHSQNMNSEQVKVKIEVINDNKFKINISKNQNSLQNAKKQE 803

Query: 335  -----QSNKKSRANQIGIKNKHCKIRNEEINRSLQ 424
                 +S  KS +++  IK +  K+     N  +Q
Sbjct: 804  LIIPLKSQIKSDSDESHIKQEENKLNQSNTNFYIQ 838


>UniRef50_Q22RM5 Cluster: Putative uncharacterized protein; n=4;
           Tetrahymena thermophila SB210|Rep: Putative
           uncharacterized protein - Tetrahymena thermophila SB210
          Length = 1962

 Score = 34.3 bits (75), Expect = 4.3
 Identities = 17/46 (36%), Positives = 25/46 (54%)
 Frame = +2

Query: 275 SEAKNLLVEKDLIHNLRKEKQSNKKSRANQIGIKNKHCKIRNEEIN 412
           SE KNL  EK  +++L K+ +  KK   NQI   N     + E++N
Sbjct: 165 SEKKNLTTEKGKVNSLTKKSEEEKKILTNQITNLNAELAQQKEKVN 210


>UniRef50_A0NT92 Cluster: Putative uncharacterized protein; n=1;
           Stappia aggregata IAM 12614|Rep: Putative
           uncharacterized protein - Stappia aggregata IAM 12614
          Length = 552

 Score = 33.5 bits (73), Expect = 7.5
 Identities = 15/64 (23%), Positives = 33/64 (51%)
 Frame = +2

Query: 233 DFQTALDIDIIGDISEAKNLLVEKDLIHNLRKEKQSNKKSRANQIGIKNKHCKIRNEEIN 412
           + + AL++ +  D++ A+ L+ EKD +  L +E  +    R     +++      + E+ 
Sbjct: 460 NMELALNVLVSADVASARELIAEKDKMRTLERESHNRHLERLKSKTVESMESSNAHLEVM 519

Query: 413 RSLQ 424
           RSL+
Sbjct: 520 RSLK 523


>UniRef50_Q97L28 Cluster: DNA polymerase III epsilon subunit (3'-5'
           exonuclease) containing BRCT domain; n=8;
           Clostridium|Rep: DNA polymerase III epsilon subunit
           (3'-5' exonuclease) containing BRCT domain - Clostridium
           acetobutylicum
          Length = 306

 Score = 33.1 bits (72), Expect = 9.9
 Identities = 14/32 (43%), Positives = 21/32 (65%)
 Frame = +2

Query: 311 IHNLRKEKQSNKKSRANQIGIKNKHCKIRNEE 406
           I NLR+E+ SNK  RA+ +  + ++ K  NEE
Sbjct: 269 IKNLRREEMSNKLKRASDLNARGQNIKFLNEE 300


>UniRef50_Q86IK7 Cluster: Similar to Arabidopsis thaliana (Mouse-ear
            cress). Dbj|BAA91806.1; n=3; Dictyostelium
            discoideum|Rep: Similar to Arabidopsis thaliana
            (Mouse-ear cress). Dbj|BAA91806.1 - Dictyostelium
            discoideum (Slime mold)
          Length = 1043

 Score = 33.1 bits (72), Expect = 9.9
 Identities = 21/57 (36%), Positives = 29/57 (50%)
 Frame = +2

Query: 251  DIDIIGDISEAKNLLVEKDLIHNLRKEKQSNKKSRANQIGIKNKHCKIRNEEINRSL 421
            DI++I   +   N   EKD+I N      +N  +  NQ   KNK+ K  NEE N S+
Sbjct: 864  DINLIKKENNNNNSNKEKDIIKNNNNNNNNNNNNNNNQ---KNKNNKNNNEEDNFSV 917


>UniRef50_Q2NI66 Cluster: Putative uncharacterized protein; n=1;
           Methanosphaera stadtmanae DSM 3091|Rep: Putative
           uncharacterized protein - Methanosphaera stadtmanae
           (strain DSM 3091)
          Length = 439

 Score = 33.1 bits (72), Expect = 9.9
 Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
 Frame = +2

Query: 227 ANDFQTALDIDIIGDISEAKNLLV--EKDLIHNLRKEKQSNKKSRANQIGIKNKHCKIRN 400
           AN+ +    I     +S+ +N+ V    +    +RKEKQS +K   N  GIK +  K + 
Sbjct: 356 ANNMKKENKIHEAPKVSKNQNIKVIHNNEKTPYIRKEKQSTQKISFNSEGIKRQGWKEKL 415

Query: 401 EEINRS 418
           +EINR+
Sbjct: 416 DEINRT 421


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 632,048,644
Number of Sequences: 1657284
Number of extensions: 10812505
Number of successful extensions: 24205
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 23292
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24170
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 81571813589
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)