Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_F23
         (899 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    23   2.9  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    23   5.0  
AF134816-1|AAD40232.1|   50|Apis mellifera unknown protein.            23   5.0  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    22   6.6  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    22   6.6  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    22   6.6  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    22   6.6  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     22   6.6  

>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 23.4 bits (48), Expect = 2.9
 Identities = 10/40 (25%), Positives = 20/40 (50%)
 Frame = +2

Query: 296 VEKDLIHNLRKEKQSNKKSRANQIGIKNKHCKIRNEEINR 415
           + +++  N+   K +    R N + I  +   I NE++NR
Sbjct: 413 INQNIAQNIDHAKNTIIDYRNNDLSINEEKRTIENEQLNR 452


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = -3

Query: 447 CELVHPSHCNDLFISSFLILQCLFLIPI 364
           C  +  SHC  +  +SFL+   L  I +
Sbjct: 71  CGAIRESHCMTITFASFLLFILLVQIAV 98


>AF134816-1|AAD40232.1|   50|Apis mellifera unknown protein.
          Length = 50

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +2

Query: 311 IHNLRKEKQSNKKSRANQIGIKNKHCKIRNEEINRSL 421
           +H L+K K+  K    NQ+ I    C I+ ++ N S+
Sbjct: 3   VHQLKK-KRRKKNLNQNQMMIWALDCSIKPKDHNGSI 38


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +3

Query: 540 GRNRQGGGTYPRGLTIGLTTSKVKYLYTIL 629
           GR   GGG     L++ LT+     ++TIL
Sbjct: 7   GRCAGGGGRLSSVLSLSLTSLASSLIFTIL 36


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +3

Query: 540 GRNRQGGGTYPRGLTIGLTTSKVKYLYTIL 629
           GR   GGG     L++ LT+     ++TIL
Sbjct: 7   GRCAGGGGRLSSVLSLSLTSLASSLIFTIL 36


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +3

Query: 540 GRNRQGGGTYPRGLTIGLTTSKVKYLYTIL 629
           GR   GGG     L++ LT+     ++TIL
Sbjct: 7   GRCAGGGGRLSSVLSLSLTSLASSLIFTIL 36


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +3

Query: 540 GRNRQGGGTYPRGLTIGLTTSKVKYLYTIL 629
           GR   GGG     L++ LT+     ++TIL
Sbjct: 7   GRCAGGGGRLSSVLSLSLTSLASSLIFTIL 36


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = -1

Query: 464 LNTRWAVNSSTHHTVMIYLF 405
           L TRW+++ +    + I+LF
Sbjct: 163 LRTRWSISGTVFDLINIHLF 182


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,119
Number of Sequences: 438
Number of extensions: 3739
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29146299
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)