Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_F22
         (920 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    31   0.23 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    31   0.30 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   3.7  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    26   6.5  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 31.1 bits (67), Expect = 0.23
 Identities = 12/25 (48%), Positives = 12/25 (48%)
 Frame = +3

Query: 723 PXXXPPPPXPIPXXXPHXGAXPPPP 797
           P   PPPP P P   P     PPPP
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPPP 29



 Score = 30.3 bits (65), Expect = 0.40
 Identities = 13/30 (43%), Positives = 13/30 (43%)
 Frame = +3

Query: 723 PXXXPPPPXPIPXXXPHXGAXPPPPXXKKK 812
           P   PPPP P     P     PPPP   KK
Sbjct: 6   PGNPPPPPPPPGFEPPSQPPPPPPPGYVKK 35


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 30.7 bits (66), Expect = 0.30
 Identities = 13/38 (34%), Positives = 14/38 (36%)
 Frame = +3

Query: 738 PPPXPIPXXXPHXGAXPPPPXXKKKXXXXPXXTPXXXP 851
           P P P+P   P  G  PPPP         P   P   P
Sbjct: 746 PAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783



 Score = 27.5 bits (58), Expect = 2.8
 Identities = 11/25 (44%), Positives = 11/25 (44%)
 Frame = +3

Query: 723 PXXXPPPPXPIPXXXPHXGAXPPPP 797
           P    PPP P P      G  PPPP
Sbjct: 756 PIMGGPPPPPPPPGVAGAGPPPPPP 780



 Score = 27.5 bits (58), Expect = 2.8
 Identities = 12/26 (46%), Positives = 12/26 (46%)
 Frame = -2

Query: 469 PPPPPXGXGXGGXXPFXPXXXPRPVS 392
           PPPPP   G  G  P  P   P  VS
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPPPPAVS 786



 Score = 24.2 bits (50), Expect(2) = 1.3
 Identities = 10/27 (37%), Positives = 11/27 (40%)
 Frame = -3

Query: 471 PPPPPPXXKEXGGXXLFXLXXXPGPFP 391
           PPPPPP     GG   +       P P
Sbjct: 777 PPPPPPPAVSAGGSRYYAPAPQAEPEP 803



 Score = 22.6 bits (46), Expect(2) = 1.3
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -3

Query: 477 KXPPPPPP 454
           K PPPPPP
Sbjct: 730 KSPPPPPP 737


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = -1

Query: 476 KXPPPPPPXXRXGGGGP 426
           K PPPPPP  R   G P
Sbjct: 309 KRPPPPPPPSRRNRGKP 325



 Score = 26.6 bits (56), Expect = 4.9
 Identities = 12/39 (30%), Positives = 13/39 (33%)
 Frame = +3

Query: 723 PXXXPPPPXPIPXXXPHXGAXPPPPXXKKKXXXXPXXTP 839
           P     PP P P   P  G  PPP    +     P   P
Sbjct: 355 PQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPP 393



 Score = 25.8 bits (54), Expect = 8.6
 Identities = 15/42 (35%), Positives = 15/42 (35%), Gaps = 7/42 (16%)
 Frame = +3

Query: 693 KXXXGXGGGXPXXXPPPPXP-------IPXXXPHXGAXPPPP 797
           K   G G       PPPP P       IP       A PPPP
Sbjct: 324 KPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPP 365


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 12/24 (50%), Positives = 12/24 (50%)
 Frame = -2

Query: 505 GGGGFFXGKXKXPPPPPXGXGXGG 434
           GG G F G    PPP P G G  G
Sbjct: 188 GGFGGFGGGSGGPPPGPGGFGGFG 211


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,966,062
Number of Sequences: 5004
Number of extensions: 23796
Number of successful extensions: 205
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 468512460
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)