Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_F22
         (920 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   0.79 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   6.8  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 21.8 bits (44), Expect(2) = 0.79
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = -1

Query: 470  PPPPPPXXRXG 438
            PPPPPP    G
Sbjct: 1355 PPPPPPPPSSG 1365



 Score = 21.4 bits (43), Expect(2) = 0.79
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = -1

Query: 482  EXKXPPPPPP 453
            + + PPPPPP
Sbjct: 1352 QQQPPPPPPP 1361


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 6.8
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -3

Query: 483  GXKXPPPPPP 454
            G   PPPPPP
Sbjct: 1855 GSPEPPPPPP 1864



 Score = 21.8 bits (44), Expect = 9.0
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = +1

Query: 619  VFSPXXXPVSGKKKNXPPPXR 681
            V S    PVSG  +  PPP R
Sbjct: 1845 VGSARNIPVSGSPEPPPPPPR 1865


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 198,747
Number of Sequences: 438
Number of extensions: 5080
Number of successful extensions: 18
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29992872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)