Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_F20
         (836 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    26   0.053
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    30   0.35 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    29   1.1  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    24   1.2  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    28   1.9  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    26   7.6  

>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 25.8 bits (54), Expect(2) = 0.053
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = -2

Query: 673 GAPPPPPPP 647
           G PPPPPPP
Sbjct: 304 GLPPPPPPP 312



 Score = 25.8 bits (54), Expect(2) = 0.053
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = -2

Query: 667 PPPPPPPXXXFFXXXGXXXP 608
           PPPPPPP   F+       P
Sbjct: 308 PPPPPPPSNDFWKDSNEPAP 327


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 30.3 bits (65), Expect = 0.35
 Identities = 13/25 (52%), Positives = 13/25 (52%)
 Frame = -1

Query: 674 GXPPPPPPPXXXFFXXXXXGXPPPP 600
           G PPPPPPP    F       PPPP
Sbjct: 7   GNPPPPPPPPG--FEPPSQPPPPPP 29



 Score = 29.1 bits (62), Expect = 0.82
 Identities = 11/22 (50%), Positives = 11/22 (50%)
 Frame = -1

Query: 665 PPPPPPXXXFFXXXXXGXPPPP 600
           PPPPPP   F        PPPP
Sbjct: 9   PPPPPPPPGFEPPSQPPPPPPP 30


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 15/48 (31%), Positives = 15/48 (31%)
 Frame = -1

Query: 668 PPPPPPPXXXFFXXXXXGXPPPPXXXXXXXXXXGXPPHPPXXXXXXGG 525
           P P P P          G PPPP            PP PP      GG
Sbjct: 742 PTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGG 789



 Score = 28.3 bits (60), Expect = 1.4
 Identities = 12/24 (50%), Positives = 12/24 (50%)
 Frame = -2

Query: 673 GAPPPPPPPXXXFFXXXGXXXPPP 602
           G PPPPPPP        G   PPP
Sbjct: 759 GGPPPPPPPPG--VAGAGPPPPPP 780



 Score = 26.6 bits (56), Expect = 4.4
 Identities = 11/29 (37%), Positives = 11/29 (37%)
 Frame = -3

Query: 612 PPPPXXXXXXXXXXGXXPPPPPXXXXXGG 526
           PPPP             PPPPP     GG
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPPPPAVSAGG 789



 Score = 25.8 bits (54), Expect = 7.6
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = -1

Query: 674 GXPPPPPPP 648
           G PPPPPPP
Sbjct: 774 GPPPPPPPP 782


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 23.8 bits (49), Expect(2) = 1.2
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = -1

Query: 668 PPPPPPP 648
           PPPPPPP
Sbjct: 337 PPPPPPP 343



 Score = 23.0 bits (47), Expect(2) = 1.2
 Identities = 14/39 (35%), Positives = 14/39 (35%)
 Frame = -1

Query: 665 PPPPPPXXXFFXXXXXGXPPPPXXXXXXXXXXGXPPHPP 549
           PPPPPP          G  PPP            PP PP
Sbjct: 361 PPPPPPR----SAPSTGRQPPP---LSSSRAVSNPPAPP 392



 Score = 22.2 bits (45), Expect(2) = 9.5
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +2

Query: 506 KXXPPPPPP 532
           K  PPPPPP
Sbjct: 308 KKRPPPPPP 316



 Score = 21.4 bits (43), Expect(2) = 9.5
 Identities = 7/13 (53%), Positives = 7/13 (53%)
 Frame = +2

Query: 515 PPPPPPXXXXXGG 553
           PPPPPP      G
Sbjct: 337 PPPPPPPRSNAAG 349


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 17/50 (34%), Positives = 18/50 (36%)
 Frame = +1

Query: 517 PPPPPXXXXXXGGWGGXPXXXXXXXXXXGGGGXPXXXXXKKXXXGGGGGG 666
           PPP P      GG+GG            G GG P          GGG GG
Sbjct: 200 PPPGPGGFGGFGGFGGE---GHHHGGHGGFGGGPGGFEGGPGGFGGGPGG 246


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 13/40 (32%), Positives = 13/40 (32%)
 Frame = -2

Query: 670 APPPPPPPXXXFFXXXGXXXPPPXXXXXXXXXXXXXPPTP 551
           APPPPPPP            P P             PP P
Sbjct: 237 APPPPPPPTLPPQSTNTSQLPMPSRNVNNLGSQVNIPPPP 276


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,849,250
Number of Sequences: 5004
Number of extensions: 27976
Number of successful extensions: 302
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 412451140
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)