Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP19_F_F19
(896 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr 2|... 47 3e-06
SPBC119.15 |||AAA family ATPase, unknown biological role|Schizos... 28 2.1
SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase Ogm4|Schizo... 27 2.7
SPBC887.14c |pfh1|pif1|pif1 helicase homolog Pfh1|Schizosaccharo... 27 2.7
SPAC19A8.08 |upf2||nonsense-mediated decay protein Upf2|Schizosa... 27 3.6
SPAP27G11.06c |||AP-1 adaptor complex subunit |Schizosaccharomyc... 26 6.3
SPBC16C6.07c |rpt1||19S proteasome regulatory subunit Rpt1|Schiz... 26 8.4
SPBC20F10.02c |||DUF1741 family protein|Schizosaccharomyces pomb... 26 8.4
SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein 5|... 26 8.4
SPBC11B10.09 |cdc2|swo2|cyclin-dependent protein kinase Cdc2|Sch... 26 8.4
SPBC15D4.07c |atg9|apg9|autophagy associated protein Atg9 |Schiz... 26 8.4
SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual 26 8.4
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 26 8.4
>SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr
2|||Manual
Length = 577
Score = 47.2 bits (107), Expect = 3e-06
Identities = 35/114 (30%), Positives = 58/114 (50%), Gaps = 13/114 (11%)
Frame = +3
Query: 231 SIFISGSMATGKTLCLQTVLNYL--SYKHV---FVDCIECYSSKIMFENILSALND---- 383
++++SG+ TGKT+ L VL+++ Y V +++C+ K +FE I S +
Sbjct: 194 ALYVSGAPGTGKTVLLHNVLDHVVSDYPKVNVCYINCMTINEPKAIFEKIHSKIVKEEIL 253
Query: 384 ENED----VKCENLMDFINCLNRLQNNYEPIVIVFDRVERLRNMDQNLLPVLLK 533
ENED +CE F N L Y P++IV D ++ L +Q +L L +
Sbjct: 254 ENEDHHINFQCELESHFTQSANEL---YNPVIIVLDEMDHLIAREQQVLYTLFE 304
>SPBC119.15 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 367
Score = 27.9 bits (59), Expect = 2.1
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +3
Query: 210 DNEPLPCSIFISGSMATGKTLCLQTVLNYLSYKH 311
D E PC+I + G +GKT +Q + +L K+
Sbjct: 3 DKEKKPCAIIVVGMAGSGKTTFMQQLNAHLHSKN 36
>SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase
Ogm4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 778
Score = 27.5 bits (58), Expect = 2.7
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = -1
Query: 407 FTFHVLVFIVEGRQYVLEHY 348
+ FH L F + GRQ L HY
Sbjct: 655 YVFHYLPFFIMGRQLFLHHY 674
>SPBC887.14c |pfh1|pif1|pif1 helicase homolog
Pfh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 805
Score = 27.5 bits (58), Expect = 2.7
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +3
Query: 231 SIFISGSMATGKTLCLQTVLNYLSYKH 311
SIF +GS TGK++ L+ ++ L K+
Sbjct: 327 SIFFTGSAGTGKSVLLRKIIEVLKSKY 353
>SPAC19A8.08 |upf2||nonsense-mediated decay protein
Upf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1049
Score = 27.1 bits (57), Expect = 3.6
Identities = 26/99 (26%), Positives = 51/99 (51%), Gaps = 4/99 (4%)
Frame = +3
Query: 327 IECYSSKIMFENILSALNDENEDVKCENLMDFINCLNR--LQNNYEPIV--IVFDRVERL 494
++ + I + + SAL +++ V EN + F+N R + + + + ++D ++ +
Sbjct: 600 MQSFLEAIQKKKLASALASQDQLV-LENALHFVNPPKRGIIVSKKKSLKEEFLYDLIQ-I 657
Query: 495 RNMDQNLLPVLLKLREFCKLNICTILVTHLIFENFNFKF 611
R D N+ P LL LR+F + IL + I E +N K+
Sbjct: 658 RLKDDNVFPTLLLLRKFDWKDDYQILY-NTIMEVWNIKY 695
>SPAP27G11.06c |||AP-1 adaptor complex subunit |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 162
Score = 26.2 bits (55), Expect = 6.3
Identities = 16/65 (24%), Positives = 35/65 (53%)
Frame = +3
Query: 381 DENEDVKCENLMDFINCLNRLQNNYEPIVIVFDRVERLRNMDQNLLPVLLKLREFCKLNI 560
D+NE + E + F+ CL++ N + ++F+ + M++ LL +L+E K N+
Sbjct: 75 DDNELIILEVIHKFVECLDKYFGNVCELDLIFNFEKAYYVMEELLLAG--ELQESSKTNV 132
Query: 561 CTILV 575
+ ++
Sbjct: 133 LSAVL 137
>SPBC16C6.07c |rpt1||19S proteasome regulatory subunit
Rpt1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 25.8 bits (54), Expect = 8.4
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +3
Query: 225 PCSIFISGSMATGKTLCLQTVLN 293
P I + G TGKTLC + V N
Sbjct: 213 PKGIMLYGPPGTGKTLCARAVAN 235
>SPBC20F10.02c |||DUF1741 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 600
Score = 25.8 bits (54), Expect = 8.4
Identities = 17/67 (25%), Positives = 29/67 (43%)
Frame = +3
Query: 672 IIFLYQKSFVQHLLNHFDIEDETTELIEKPELFANFLNAFLSVFYXXCRDLIELKHMARL 851
+ FLY SF+ H+ ++D+ +I K + F A ++ D E + RL
Sbjct: 157 VSFLYNSSFISHIYGNYDVFSTLYTVILKRKF--GFETAVYAIGLLSACDKFETVNTFRL 214
Query: 852 TSSNSVN 872
S V+
Sbjct: 215 GLSKIVD 221
>SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein
5|Schizosaccharomyces pombe|chr 3|||Manual
Length = 736
Score = 25.8 bits (54), Expect = 8.4
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +3
Query: 336 YSSKIMFENILSALNDENEDVKCENLMDF 422
Y S++ ENIL + ENE E + DF
Sbjct: 309 YDSELAIENILESKCFENEQAIIEGVKDF 337
>SPBC11B10.09 |cdc2|swo2|cyclin-dependent protein kinase
Cdc2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 297
Score = 25.8 bits (54), Expect = 8.4
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = +3
Query: 339 SSKIMFENILSALNDENEDVKCENLMDFINCLNRLQNNYE 458
S+ I ++L +NDEN C L+D ++ ++L +E
Sbjct: 46 STAIREISLLKEVNDENNRSNCVRLLDILHAESKLYLVFE 85
>SPBC15D4.07c |atg9|apg9|autophagy associated protein Atg9
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 702
Score = 25.8 bits (54), Expect = 8.4
Identities = 32/135 (23%), Positives = 51/135 (37%), Gaps = 8/135 (5%)
Frame = +3
Query: 420 FINCLNRLQNNYEPIVIVFDRVERLRNM--DQNLLPVLLKLREFCKLNICTIL----VTH 581
F+NCL + PIV ++ + + + P L R + L + T + H
Sbjct: 420 FLNCL------FAPIVAIYLVIHNFFRYFNEYHKNPGALSTRRYTPLALWTFREYNELQH 473
Query: 582 LIFENFNFKFGVREPIKLYFPNYNKEELFRIIFLYQKSF--VQHLLNHFDIEDETTELIE 755
E N + FP++N LF+ I SF + ++ FD E T I
Sbjct: 474 FFDERINDSYAAASHYVSQFPDFNMIRLFKYISFILGSFTAILVIITVFDPELMVTFEIT 533
Query: 756 KPELFANFLNAFLSV 800
K +L F S+
Sbjct: 534 KDRSVLFYLGLFGSL 548
>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1489
Score = 25.8 bits (54), Expect = 8.4
Identities = 18/69 (26%), Positives = 40/69 (57%), Gaps = 5/69 (7%)
Frame = +3
Query: 615 VREPIKLYFPNYNKEELFRII--FLYQKSFVQHLL---NHFDIEDETTELIEKPELFANF 779
++ ++ YFP +KEE+F +I F+Y ++V +L ++F + D + +++ L+
Sbjct: 1011 LKNSLQRYFPAAHKEEIFGVIGKFVYW-AYVAPVLVSPDNFKLVDGSITALQRKNLYT-- 1067
Query: 780 LNAFLSVFY 806
L++ LS +
Sbjct: 1068 LSSILSEIF 1076
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 25.8 bits (54), Expect = 8.4
Identities = 11/46 (23%), Positives = 24/46 (52%)
Frame = +3
Query: 477 DRVERLRNMDQNLLPVLLKLREFCKLNICTILVTHLIFENFNFKFG 614
D ++ L+ +++ + LRE C + + V+ ++ +NF F G
Sbjct: 1232 DLLDSLKGCEESFNKYAVSLRELCTKSEIDVPVSEILDDNFVFNAG 1277
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,294,735
Number of Sequences: 5004
Number of extensions: 66109
Number of successful extensions: 197
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 197
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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