Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_F19
         (896 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0034 + 31197846-31198417,31198562-31198987,31199074-311993...    56   4e-08
11_06_0542 + 24777453-24777632,24777654-24778478,24778576-247793...    32   0.54 
03_03_0149 + 14843880-14844145,14846501-14846561,14846608-148467...    32   0.71 
12_01_0133 - 1011442-1011609,1011792-1011906,1012188-1012279,101...    31   1.6  
07_03_1651 - 28395369-28395436,28395524-28395575,28395857-283960...    30   2.9  
02_05_1224 + 35045268-35045270,35045735-35045863,35046037-350461...    29   5.0  
02_01_0033 + 202703-202705,203397-203458,203566-203665,203875-20...    29   5.0  
11_06_0458 + 23808402-23808469,23808800-23809684,23810011-238119...    29   6.6  
04_01_0206 + 2507827-2508705,2508844-2509902                           28   8.8  
01_01_0575 - 4271910-4272371,4272923-4272928,4272999-4273174,427...    28   8.8  

>03_06_0034 +
           31197846-31198417,31198562-31198987,31199074-31199386,
           31199510-31199560
          Length = 453

 Score = 56.0 bits (129), Expect = 4e-08
 Identities = 47/168 (27%), Positives = 82/168 (48%), Gaps = 15/168 (8%)
 Frame = +3

Query: 219 PLPC-SIFISGSMATGKTLCLQTVLNYL--SYKHVFVDCIECYSSKIMFENILSALNDEN 389
           P P   + + G  ATGKT  L   L YL  S + V+       S + +F ++LS L+   
Sbjct: 9   PAPALPLMLHGGAATGKTRALLLALRYLRPSQRLVYAALRSLPSPRALFASLLSQLSATP 68

Query: 390 EDVKCENLM-----DFI----NCLNRLQNNYEPIVIVFDRVERLRNMDQN--LLPVLLKL 536
                 + +     DF+    + LN + +  E + +VFD +E +R+ D+   LLP+LL+L
Sbjct: 69  FSTSSRHRVPDKPSDFVAALRDALNGIVSQGEVVYLVFDNLEVVRSWDKGGQLLPLLLRL 128

Query: 537 REFCKL-NICTILVTHLIFENFNFKFGVREPIKLYFPNYNKEELFRII 677
            +  +L  +  + V+    + +    G  EP  +YFP+Y  +E+  I+
Sbjct: 129 HDLLQLPQVVLVYVSSATPDAYYSMTGSVEPNYVYFPDYTVDEVRDIL 176


>11_06_0542 + 24777453-24777632,24777654-24778478,24778576-24779319,
            24779422-24780354,24780456-24780938,24780969-24781082,
            24781240-24781636,24781732-24782024,24782392-24782802
          Length = 1459

 Score = 32.3 bits (70), Expect = 0.54
 Identities = 29/105 (27%), Positives = 44/105 (41%), Gaps = 4/105 (3%)
 Frame = +3

Query: 483  VERLRNMDQNLLPVLLKLREFCKLNICTILVTH--LIFENFNFKFGVREPIKLYFPNYNK 656
            VER  N+ +  L  L  L   C + +     T   L F    FK    E I+ Y   + K
Sbjct: 1047 VERFTNLAKKNLEGLGDLPNLCYVRLRHKGYTDGKLTFNEHKFKNLKGETIEKYMLTFKK 1106

Query: 657  EELFRIIFLYQKSFVQHLLNHFDIEDETTELIEKPEL--FANFLN 785
            +E   + +L  + F +    +   ED  T  +EK  L  FAN ++
Sbjct: 1107 DEFQHLKYLLAEGFSKSFETNITFEDGATPKLEKIILYSFANIMS 1151


>03_03_0149 +
           14843880-14844145,14846501-14846561,14846608-14846720,
           14848448-14848540,14849578-14849793,14853773-14856023
          Length = 999

 Score = 31.9 bits (69), Expect = 0.71
 Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
 Frame = +3

Query: 207 DDNEPLPCSIFISGSMATGKTLCLQTVLNYLSYKHVF-VDCIECYSSKIMFENILSALND 383
           +DN P+  S+  SG    GKT  ++ V N +  K+ F V  +E ++  +   NIL  +  
Sbjct: 282 NDNRPIVVSV--SGKSGVGKTTLVRNVYNIMKKKNCFDVHAMESFAPHLTAPNILHQIVQ 339

Query: 384 E-NEDVK 401
           +  ED K
Sbjct: 340 QLTEDNK 346


>12_01_0133 -
           1011442-1011609,1011792-1011906,1012188-1012279,
           1012384-1012469,1012989-1013088,1014139-1014333
          Length = 251

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = +3

Query: 639 FPNYNKEELFR-IIFLYQKSFVQHLLNHFDIEDETTELIEKPELF 770
           FP+ N +  +R  I     S   H L+  +IED+T E++EK E F
Sbjct: 32  FPSLNLQSYWRGYIHSSFTSLFPHRLSSPEIEDQTLEMLEKKECF 76


>07_03_1651 -
           28395369-28395436,28395524-28395575,28395857-28396092,
           28396362-28396419,28396509-28396577,28396686-28396791,
           28397104-28397171,28397266-28397385,28398144-28398231,
           28399433-28399534,28399699-28399757,28399866-28400003,
           28400222-28400473,28400508-28400593,28401061-28401165,
           28402351-28402516
          Length = 590

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 20/87 (22%), Positives = 39/87 (44%), Gaps = 4/87 (4%)
 Frame = +3

Query: 189 CSIYSXDDNEPLPCSIFISGSMATGKT--LCLQTVLN--YLSYKHVFVDCIECYSSKIMF 356
           CS+   DD   + C++F S  +    T  +CL TV +   LS  H++     C ++ +  
Sbjct: 172 CSLVFDDDKPTISCNLFDSMRVDISLTCSICLDTVFDPVALSCGHIYCYLCSCSAASVTI 231

Query: 357 ENILSALNDENEDVKCENLMDFINCLN 437
            + L +   +++   C     F N ++
Sbjct: 232 VDGLKSAERKSKCPLCRQAGVFPNAVH 258


>02_05_1224 +
           35045268-35045270,35045735-35045863,35046037-35046180,
           35046306-35046451,35046583-35046739,35046838-35046896,
           35046978-35047137,35047716-35047865,35047969-35048105,
           35048186-35048332,35048428-35048540,35048880-35048971,
           35049637-35049738,35050108-35050145,35050255-35050381,
           35050462-35050632,35050721-35050852,35050929-35051038,
           35051118-35051178,35051386-35051427,35051756-35051933,
           35052043-35052248,35052843-35052962,35053138-35053182,
           35053310-35053408,35053846-35054058,35054254-35054393,
           35054469-35054583,35054684-35054722,35054816-35054899,
           35054969-35055139,35055891-35056100,35056193-35056378,
           35056473-35056601,35056679-35056749,35056834-35056933,
           35057016-35057072,35057778-35057834,35057940-35058020,
           35058256-35058338,35058448-35058562
          Length = 1572

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +3

Query: 213 NEPLPCSIFISGSMATGKTLCLQTVLNYLSY 305
           NE +  SI +SG    GKT   + ++ YL+Y
Sbjct: 145 NEGISQSILVSGESGAGKTESTKMIMRYLAY 175


>02_01_0033 +
           202703-202705,203397-203458,203566-203665,203875-203916,
           204264-204305,204437-204589,206559-207221
          Length = 354

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 19/78 (24%), Positives = 38/78 (48%)
 Frame = +3

Query: 318 VDCIECYSSKIMFENILSALNDENEDVKCENLMDFINCLNRLQNNYEPIVIVFDRVERLR 497
           ++ IE Y SK++ E + S    E ++++ +      +   + Q       ++ D++  LR
Sbjct: 14  IEAIEGYKSKLLGEGLGSCSVQELQELEVQLEKSLCSIRQKKQK------MLMDQILELR 67

Query: 498 NMDQNLLPVLLKLREFCK 551
             + NLL   + LR+ CK
Sbjct: 68  EKEMNLLKENMVLRDQCK 85


>11_06_0458 +
           23808402-23808469,23808800-23809684,23810011-23811961,
           23812210-23812285,23813064-23813072,23813243-23813335,
           23813578-23813581,23813780-23814703,23814926-23815909,
           23816073-23816118,23816376-23816951,23817253-23817798,
           23817820-23818416
          Length = 2252

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 25/98 (25%), Positives = 39/98 (39%), Gaps = 3/98 (3%)
 Frame = +3

Query: 195 IYSXDDNEPLPCSIFISGSMATGKTLCLQTVLNYLSYKH---VFVDCIECYSSKIMFENI 365
           I S DD E     + I GS   GK+     V   +  +     FV   +     ++FE I
Sbjct: 228 IKSLDDGEQRMKVVSIVGSGGLGKSTLANQVYQKIGNQFDCKAFVSLSQHPVMGMIFETI 287

Query: 366 LSALNDENEDVKCENLMDFINCLNRLQNNYEPIVIVFD 479
           L  +NDE   ++  +    IN L     N    +++ D
Sbjct: 288 LYQVNDEVGTIRSGDKEQVINELRAFLKNKRYFIVIDD 325


>04_01_0206 + 2507827-2508705,2508844-2509902
          Length = 645

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 20/102 (19%), Positives = 42/102 (41%), Gaps = 7/102 (6%)
 Frame = +3

Query: 291 NYLSYKHVFVDCIEC-------YSSKIMFENILSALNDENEDVKCENLMDFINCLNRLQN 449
           +Y+ YKH+ +  +          ++ +MF   LS   +    ++C  L +  +    +  
Sbjct: 124 SYVLYKHIIIGDVTTRGHEPFLLANVLMFVVGLSKYGERIHALRCNKLSNIWSSPKEVYR 183

Query: 450 NYEPIVIVFDRVERLRNMDQNLLPVLLKLREFCKLNICTILV 575
           N + +  + DR  R+R  ++  L     L   CK  I   ++
Sbjct: 184 NNQLLHYLQDRDHRIREEEELSLQYAHSLHHICKRGIVNFVI 225


>01_01_0575 -
           4271910-4272371,4272923-4272928,4272999-4273174,
           4274150-4275299
          Length = 597

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 17/60 (28%), Positives = 32/60 (53%)
 Frame = +3

Query: 585 IFENFNFKFGVREPIKLYFPNYNKEELFRIIFLYQKSFVQHLLNHFDIEDETTELIEKPE 764
           + +N++ KFG++  ++LY P+ N+ E+     +   +  +    H D E+E  E  E PE
Sbjct: 208 VAKNWSEKFGIK--MELYAPDNNEVEMTEAPLVENATATEKKEEHVDEEEEEEE--EDPE 263


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,740,090
Number of Sequences: 37544
Number of extensions: 339160
Number of successful extensions: 723
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 711
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 723
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2530383840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)