Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_F19
         (896 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80437-18|AAB37629.1|  518|Caenorhabditis elegans Cell division ...    39   0.006
Z82278-6|CAB05258.1|  690|Caenorhabditis elegans Hypothetical pr...    31   0.85 
AL021493-6|CAA16394.2|  781|Caenorhabditis elegans Hypothetical ...    31   1.1  
AF025451-10|AAB71207.1|  343|Caenorhabditis elegans Hypothetical...    31   1.5  
U39472-8|AAP86618.1|  338|Caenorhabditis elegans Serpentine rece...    30   2.6  
AL031633-9|CAA21023.1|  636|Caenorhabditis elegans Hypothetical ...    30   2.6  
Z75712-1|CAB00040.1|  724|Caenorhabditis elegans Hypothetical pr...    29   3.4  
U29488-13|AAA68780.1| 1599|Caenorhabditis elegans Hypothetical p...    29   3.4  
Z82285-5|CAB05298.2| 1679|Caenorhabditis elegans Hypothetical pr...    29   6.0  
Z81485-2|CAB03974.2|  708|Caenorhabditis elegans Hypothetical pr...    28   7.9  
Z81147-11|CAL69739.1|  323|Caenorhabditis elegans Hypothetical p...    28   7.9  
Z75543-1|CAA99867.1|  314|Caenorhabditis elegans Hypothetical pr...    28   7.9  
AF067940-4|AAC19201.1|  487|Caenorhabditis elegans Hypothetical ...    28   7.9  

>U80437-18|AAB37629.1|  518|Caenorhabditis elegans Cell division
           cycle related protein6 protein.
          Length = 518

 Score = 38.7 bits (86), Expect = 0.006
 Identities = 37/154 (24%), Positives = 66/154 (42%), Gaps = 5/154 (3%)
 Frame = +3

Query: 231 SIFISGSMATGKTLCLQTVLNYL--SYKHVFVDCIECYSSKIMFENILSALNDENEDVKC 404
           SI++SG   TGKT     VL  L  S +   V+C    +   +F+ I  +L+ + +    
Sbjct: 197 SIYVSGQPGTGKTATTMRVLKSLGKSVRSCIVNCASTNTKSALFKTIFESLDLDGK--PN 254

Query: 405 ENLMDFINCLNRLQNNYEPIVIVFDRVERLRNMDQNLLPVLLKLREFCKLNICTILVTHL 584
           E + +       ++    P+V+V D ++ L N     L    +  E     I  + + + 
Sbjct: 255 EEIFE-----KHVKQFKTPLVLVLDEIDHLANRKNAALYAAFQWPETLSRKIIILGIANS 309

Query: 585 I--FENFNFKFGVREPIK-LYFPNYNKEELFRII 677
           I   E    K  + +P K L F  Y K+++  I+
Sbjct: 310 IDLTERLLPKLMLAKPPKRLVFEPYTKDDIVEIL 343


>Z82278-6|CAB05258.1|  690|Caenorhabditis elegans Hypothetical
           protein M162.7 protein.
          Length = 690

 Score = 31.5 bits (68), Expect = 0.85
 Identities = 18/72 (25%), Positives = 37/72 (51%)
 Frame = +3

Query: 291 NYLSYKHVFVDCIECYSSKIMFENILSALNDENEDVKCENLMDFINCLNRLQNNYEPIVI 470
           NYL  +H F    + YS   +F+ ++    +  +  K +N +  I C  +L+ + E +  
Sbjct: 413 NYLHQRHPF----DKYSK--LFQKLIDGRKEFTD--KVDNELSVIKCFQQLEQDSEDLQK 464

Query: 471 VFDRVERLRNMD 506
           V   ++++RN+D
Sbjct: 465 VIQVIQKMRNLD 476


>AL021493-6|CAA16394.2|  781|Caenorhabditis elegans Hypothetical
           protein Y51A2B.6 protein.
          Length = 781

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 30/116 (25%), Positives = 56/116 (48%), Gaps = 5/116 (4%)
 Frame = +3

Query: 399 KCENLMDFINCLNRLQNNYEPIVIVFDRVERLRNMD----QNLLPVLLKLREFCKLNICT 566
           K +N +  I CL +L+ + E    V   ++++RN+D    QN+  +   + EF K N+  
Sbjct: 538 KVDNELSVIKCLQQLKQDSEHFQKVIQVIQKMRNLDKDSVQNIQGIPSVVSEFLK-NLAK 596

Query: 567 IL-VTHLIFENFNFKFGVREPIKLYFPNYNKEELFRIIFLYQKSFVQHLLNHFDIE 731
           +  ++  + EN N K  V   +     ++NK +  + I     S VQ++    D+E
Sbjct: 597 VREISDKMKENSNNKTFVMNAL-----SFNKSDSIKSIV----SSVQNVYGLLDLE 643


>AF025451-10|AAB71207.1|  343|Caenorhabditis elegans Hypothetical
           protein C24H12.11 protein.
          Length = 343

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 20/72 (27%), Positives = 29/72 (40%), Gaps = 3/72 (4%)
 Frame = +3

Query: 609 FGVREPIKLYFPNYNKEELFRIIFLYQKSFVQHLL---NHFDIEDETTELIEKPELFANF 779
           + V   I  Y  NY K   F +I       + HLL   N+  + D     I+  +LF NF
Sbjct: 126 YDVNHYINFYCTNYKKVSKFPVIPFKTSQELTHLLDILNNSFLIDHVNLAIDHDQLFGNF 185

Query: 780 LNAFLSVFYXXC 815
            +A     +  C
Sbjct: 186 QSALSHPLFRKC 197


>U39472-8|AAP86618.1|  338|Caenorhabditis elegans Serpentine
           receptor, class a (alpha)protein 32 protein.
          Length = 338

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
 Frame = +3

Query: 528 LKLREFCKLNICTILVTHLIFENF-NFKFGVREPIKLYFPNYNKEELFRIIFLYQKSFVQ 704
           L  ++    +I  +L+  L++ N  N  + + E   LY      + +  I+F  ++ FVQ
Sbjct: 53  LTSKQLFSKSITHLLIASLVYGNVHNASYTIIETWSLYRSFAYSDNMTAIMFTSEECFVQ 112

Query: 705 HLLN 716
           H+LN
Sbjct: 113 HVLN 116


>AL031633-9|CAA21023.1|  636|Caenorhabditis elegans Hypothetical
           protein Y39A1A.12 protein.
          Length = 636

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 27/110 (24%), Positives = 49/110 (44%), Gaps = 14/110 (12%)
 Frame = +3

Query: 231 SIFISGSMATGKTLCLQTVLNYLS-----YKHVFVDCIECYSSKIMFENILSALNDE-NE 392
           +++ISG   TGKT  ++ V+N +       K V+V+       K +F  I + + +E N 
Sbjct: 294 AMYISGVPGTGKTATVRAVVNSMKKSKKCQKFVYVEVNAMIFKKTVFVEIYNGIQEEYNI 353

Query: 393 DVKCENL--------MDFINCLNRLQNNYEPIVIVFDRVERLRNMDQNLL 518
             K +           +  +   R      PIV++ D ++ L N  Q++L
Sbjct: 354 SKKPQRAKITATAARQELNSIFKREDPKRPPIVVLIDELDSLCNRKQDVL 403


>Z75712-1|CAB00040.1|  724|Caenorhabditis elegans Hypothetical
           protein K04G2.3 protein.
          Length = 724

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 4/71 (5%)
 Frame = +3

Query: 225 PCSIFISGSMATGKTLCLQTVLNYLSYKHVFV-DCIECYS-SKIMFENILSA-LND-ENE 392
           PCS+ I G   +GKTL L+ V   LS    ++  C E    + +   NI+   +N+ E E
Sbjct: 272 PCSVLIWGLPGSGKTLLLKEVALVLSGSTTYIGSCEELMELNGVTTGNIVIVDVNELEKE 331

Query: 393 DVKCENLMDFI 425
           + K    + F+
Sbjct: 332 NTKANRALSFL 342


>U29488-13|AAA68780.1| 1599|Caenorhabditis elegans Hypothetical
           protein C56C10.12 protein.
          Length = 1599

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 20/68 (29%), Positives = 34/68 (50%)
 Frame = +3

Query: 351 MFENILSALNDENEDVKCENLMDFINCLNRLQNNYEPIVIVFDRVERLRNMDQNLLPVLL 530
           M+ +I +   +E+  +  ENL+ F +  N L  + E  V  F + E +     +L P+L 
Sbjct: 200 MYPSIKTYERNEHGLMTEENLVTFYH--NPLYEHAEMFVDQFIKTEEVPTQSGSLFPLLA 257

Query: 531 KLREFCKL 554
           +LR  C L
Sbjct: 258 RLRTVCDL 265


>Z82285-5|CAB05298.2| 1679|Caenorhabditis elegans Hypothetical protein
            T28F3.5 protein.
          Length = 1679

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 20/95 (21%), Positives = 43/95 (45%), Gaps = 1/95 (1%)
 Frame = +3

Query: 315  FVDCIECYSSKIMFENILSALNDENEDV-KCENLMDFINCLNRLQNNYEPIVIVFDRVER 491
            F++  + + ++  F+  +  +   N DV   EN++D I   + L+   + I  V   + +
Sbjct: 797  FLETEQYFDARDSFDESVQNMIKSNVDVLDFENVVDQIYSNSHLRTKEKLIFGVLSHISK 856

Query: 492  LRNMDQNLLPVLLKLREFCKLNICTILVTHLIFEN 596
             +      +P+L KL E   L    IL   +++ +
Sbjct: 857  SQVEPDFFIPILWKLFELNHLKEVNILTARILYRS 891


>Z81485-2|CAB03974.2|  708|Caenorhabditis elegans Hypothetical
           protein C49F5.2 protein.
          Length = 708

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
 Frame = +3

Query: 255 ATGKTLCLQTVLNYLSYKHVFVDCIECYSSKIMFENILSALNDENE-DVKCENLMDFINC 431
           A G+TL    + N L Y H+  + ++     +++E I  A + EN    KC +    +NC
Sbjct: 320 AKGETLKTVKIPNPLLYDHIINNMVDKVKEPLLYEAIKIAGSSENVIRCKCCSQDPVVNC 379

Query: 432 LN 437
            +
Sbjct: 380 FD 381


>Z81147-11|CAL69739.1|  323|Caenorhabditis elegans Hypothetical
           protein T09E11.12 protein.
          Length = 323

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 13/46 (28%), Positives = 23/46 (50%)
 Frame = +3

Query: 531 KLREFCKLNICTILVTHLIFENFNFKFGVREPIKLYFPNYNKEELF 668
           +L +   L + TI V +  F  +N KF +   +  +FP    +E+F
Sbjct: 7   RLDQAALLTLATIAVLNFQFSTYNLKFLIPAELYTHFPAIIHQEIF 52


>Z75543-1|CAA99867.1|  314|Caenorhabditis elegans Hypothetical
           protein K01D12.1 protein.
          Length = 314

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 7/58 (12%)
 Frame = +3

Query: 306 KHVFVDCIECYSSKIMFENILSALNDENEDVKCE---NLMDFINC----LNRLQNNYE 458
           KH+ V  +   SS ++  NI+   N+E +DV  E       F NC    L  L+ NYE
Sbjct: 22  KHILVAMV-LISSMLLLINIMQDSNEEGDDVPVEGTPTFKAFYNCVYPKLASLRGNYE 78


>AF067940-4|AAC19201.1|  487|Caenorhabditis elegans Hypothetical
           protein F36F12.2 protein.
          Length = 487

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -2

Query: 433 KQFIKSIKFSHFTSSFSSLRADNMFSNIIF 344
           + F+ +I    FTS  SSL  D+ ++NI+F
Sbjct: 386 EDFLSTISQPEFTSLTSSLPKDDFYTNIVF 415


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,059,093
Number of Sequences: 27780
Number of extensions: 367226
Number of successful extensions: 1033
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1000
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1032
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2276333906
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)