Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP19_F_F15
(918 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC800.09 |sum2||G2/M transition checkpoint protein Sum2|Schizo... 85 1e-17
SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos... 30 0.40
SPBC30B4.04c |sol1||SWI/SNF complex subunit Sol1|Schizosaccharom... 29 0.70
SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomy... 29 0.92
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha... 27 2.8
SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr 3|||Ma... 26 6.5
SPBC16E9.01c |php4|SPBP16F5.09c|CCAAT-binding factor complex sub... 26 6.5
SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c... 26 8.6
>SPBC800.09 |sum2||G2/M transition checkpoint protein
Sum2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 426
Score = 85.4 bits (202), Expect = 1e-17
Identities = 48/118 (40%), Positives = 69/118 (58%), Gaps = 2/118 (1%)
Frame = +1
Query: 172 LGSKISLISKADIRYEGRLFTVDPQECTIALASVRSFGTEDR--ETQYPVAPQSQVYDYI 345
+GS+ISLISK+DIRY G L ++ Q+ T+AL VR GTE R + + P V+DYI
Sbjct: 5 IGSRISLISKSDIRYVGILQDINSQDSTLALKHVRWCGTEGRKQDPSQEIPPSDNVFDYI 64
Query: 346 LFRGSDIKDIRVLNNVPSMPNDPAIMQMSVPPTLGTGPAPGQYVGQFNHPVVGQTPYP 519
+FRGSD+KD+R+ + P+ P + + P +G+ GQY +N Q P P
Sbjct: 65 VFRGSDVKDLRI-EEPATTPSAPPVQPPNDPAIIGSN--SGQY--NWNQAQTAQPPQP 117
>SPBC119.07 |ppk19||serine/threonine protein kinase
Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1706
Score = 30.3 bits (65), Expect = 0.40
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Frame = +2
Query: 410 ILPLC--RCLYPQLWVLDQLLGSMWGSLTIQLLDKLHILSIIQWLAFQVEFTTSSTRRA 580
ILPL + P+ VL+ +LGS G + + L +KL ++ I+Q + V + RRA
Sbjct: 671 ILPLMLQALVDPEPAVLESVLGSFSGLIELHLFEKLVVVDILQLVLPLVAVPNAYIRRA 729
>SPBC30B4.04c |sol1||SWI/SNF complex subunit
Sol1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 865
Score = 29.5 bits (63), Expect = 0.70
Identities = 19/48 (39%), Positives = 21/48 (43%)
Frame = +1
Query: 424 QMSVPPTLGTGPAPGQYVGQFNHPVVGQTPYPQYHPMAGFPSGVHNQL 567
QM L + P +G HP V QTP P P PSG NQL
Sbjct: 138 QMQSREALLSQQIPPNQIGINAHPAVRQTPQPA--PSPNTPSGNANQL 183
>SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1010
Score = 29.1 bits (62), Expect = 0.92
Identities = 17/63 (26%), Positives = 26/63 (41%)
Frame = +2
Query: 518 LSIIQWLAFQVEFTTSSTRRAQCLTSLVEDPNKMHLGQVHLLSVFIGKVQQLTKAFRLVQ 697
+ I+ LA + + + +C VEDP K H LLS+ L V+
Sbjct: 813 VEIVDRLAAMLNYNLQALCGPKCSNLKVEDPTKYHFNAKTLLSIIFDVYLNLCNEPAFVE 872
Query: 698 ALA 706
A+A
Sbjct: 873 AVA 875
>SPCC1235.05c |fft2||fun thirty related protein
Fft2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1284
Score = 27.5 bits (58), Expect = 2.8
Identities = 18/71 (25%), Positives = 29/71 (40%), Gaps = 4/71 (5%)
Frame = +1
Query: 472 YVGQFNHPVVGQTPYPQYH----PMAGFPSGVHNQLNKTSSMLDLIGGGSQQNASRSGTP 639
YVGQ + PV P P Y+ P AG P+ + + + + GG + S
Sbjct: 111 YVGQSSQPVPSYNPLPSYNTASLPNAGIPAAMPGMPSGYPGTVPIPQGGYNAHYSSPYNN 170
Query: 640 AVGVHRKSPTA 672
+ +PT+
Sbjct: 171 GYPIGAVNPTS 181
>SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 630
Score = 26.2 bits (55), Expect = 6.5
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +3
Query: 489 PSSCWTNSISSVSSNGWLSKWS 554
P+S N V+ NGWL++WS
Sbjct: 349 PNSTVLNEHGYVTYNGWLAQWS 370
>SPBC16E9.01c |php4|SPBP16F5.09c|CCAAT-binding factor complex
subunit Php4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 295
Score = 26.2 bits (55), Expect = 6.5
Identities = 20/89 (22%), Positives = 35/89 (39%), Gaps = 1/89 (1%)
Frame = +1
Query: 235 VDPQECTIALASVRSFGTEDRETQYP-VAPQSQVYDYILFRGSDIKDIRVLNNVPSMPND 411
+ P+ + SV RE QY + Q + L ++ ++ N+ P +
Sbjct: 55 IKPRPGPTSALSVEEAKFRVREKQYQDTIGKLQKENNELLEQLEMLQAQLKNSTLDSPKE 114
Query: 412 PAIMQMSVPPTLGTGPAPGQYVGQFNHPV 498
+ V P T +YV Q+N+PV
Sbjct: 115 VEVNSEVVKPDSATTENENRYVNQYNYPV 143
>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 796
Score = 25.8 bits (54), Expect = 8.6
Identities = 15/56 (26%), Positives = 28/56 (50%)
Frame = -3
Query: 673 QLLDFSYEHRQQVYLTEMHFVGILHQ*GQALSSSC*AGCELHLESQPLDDTEDMEF 506
QLL+ ++H Q L + HF GI GQ + + +L+ SQ +++ ++
Sbjct: 332 QLLEVPWQHHQCHPLIKTHFFGIF---GQKIDAIDFYSAKLYKISQQIENARSFDY 384
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.315 0.131 0.392
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,522,149
Number of Sequences: 5004
Number of extensions: 74311
Number of successful extensions: 159
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 466510270
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
- SilkBase 1999-2023 -