Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP19_F_F15
         (918 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       29   0.045
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    26   0.42 
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    24   2.2  
DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate r...    22   6.8  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    22   6.8  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   6.8  
AB006152-1|BAA24504.1|  178|Apis mellifera inositol 1,4,5-tripho...    22   6.8  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    22   9.0  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    22   9.0  
AM158085-1|CAJ43389.1|  171|Apis mellifera globin 1 protein.           22   9.0  
AM158084-1|CAJ43388.1|  171|Apis mellifera globin 1 protein.           22   9.0  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    22   9.0  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   9.0  
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     22   9.0  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 29.5 bits (63), Expect = 0.045
 Identities = 20/65 (30%), Positives = 24/65 (36%), Gaps = 1/65 (1%)
 Frame = +1

Query: 412 PAIMQMSVPPTLGT-GPAPGQYVGQFNHPVVGQTPYPQYHPMAGFPSGVHNQLNKTSSML 588
           P I Q S  P+ G  GP P  +      P  G  P P   P  G P G     N +  M+
Sbjct: 7   PIITQQSQQPSSGAPGPQPSPHQSP-QAPQRGSPPNPSQGPPPGGPPGAPPSQNPSQMMI 65

Query: 589 DLIGG 603
               G
Sbjct: 66  SPASG 70



 Score = 23.0 bits (47), Expect = 3.9
 Identities = 10/25 (40%), Positives = 10/25 (40%)
 Frame = +1

Query: 394 PSMPNDPAIMQMSVPPTLGTGPAPG 468
           PS    P   Q   PP    GP PG
Sbjct: 25  PSPHQSPQAPQRGSPPNPSQGPPPG 49


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 26.2 bits (55), Expect = 0.42
 Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
 Frame = +2

Query: 401 CPMILPLCRCLYPQ---LWVLDQLLGSMWGSLTIQLLD 505
           CP+IL  C+C+Y Q   L +  +L G +   + +   D
Sbjct: 176 CPLILGSCKCIYVQSINLCMAGRLFGYLCPGMALSQFD 213


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
 Frame = -3

Query: 700 RLYQPECFGQLLDFSYEHRQQVYLTEMHFVGILHQ*GQALSSS---C*AGCELHLESQPL 530
           R+++P+ +      SY H     +T  +    L+Q G+ L SS     AGC ++LE+ P+
Sbjct: 84  RIWKPDTYFYNGKHSYLHT----ITSPNKFVRLYQDGRVLYSSRLTIKAGCPMNLENFPM 139

Query: 529 D 527
           D
Sbjct: 140 D 140


>DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate
           receptor protein.
          Length = 322

 Score = 22.2 bits (45), Expect = 6.8
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +2

Query: 626 GQVHLLSVFIGKVQQLTKAFRLVQALAA 709
           G +HLL     + Q++ +AF+ VQ L +
Sbjct: 145 GALHLLFRHFSQRQEVLQAFKQVQLLVS 172


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 22.2 bits (45), Expect = 6.8
 Identities = 10/32 (31%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
 Frame = +2

Query: 428 CLYPQLW--VLDQLLGSMWGSLTIQLLDKLHI 517
           C   + W  ++  ++G+     T+ LLDK+HI
Sbjct: 303 CFLFRAWESIIVGMIGAFITCFTMPLLDKMHI 334


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 22.2 bits (45), Expect = 6.8
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = +3

Query: 213 LRRPTFYCRSSGMYY 257
           + +PTF C+  G +Y
Sbjct: 227 IEQPTFLCKGDGKWY 241


>AB006152-1|BAA24504.1|  178|Apis mellifera inositol
           1,4,5-triphosphate recepter protein.
          Length = 178

 Score = 22.2 bits (45), Expect = 6.8
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +2

Query: 626 GQVHLLSVFIGKVQQLTKAFRLVQALAA 709
           G +HLL     + Q++ +AF+ VQ L +
Sbjct: 113 GALHLLFRHFSQRQEVLQAFKQVQLLVS 140


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 21.8 bits (44), Expect = 9.0
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = +3

Query: 699 RWQLXSTTGITDAGATTLH 755
           RW L    GIT  G T +H
Sbjct: 3   RWLLLMYLGITCQGVTDIH 21


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 9.0
 Identities = 17/52 (32%), Positives = 20/52 (38%)
 Frame = +1

Query: 385 NNVPSMPNDPAIMQMSVPPTLGTGPAPGQYVGQFNHPVVGQTPYPQYHPMAG 540
           N  PS PN P          L +    GQ     N  V    PYP  HP++G
Sbjct: 62  NFSPSGPNSPGSFTAGCHSNLLSTSPSGQ-----NKAVA---PYPPNHPLSG 105


>AM158085-1|CAJ43389.1|  171|Apis mellifera globin 1 protein.
          Length = 171

 Score = 21.8 bits (44), Expect = 9.0
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +1

Query: 373 IRVLNNVPSMPNDPAIMQMSV 435
           I  LNNV    +DP +M+ S+
Sbjct: 90  ITALNNVIDFLHDPGLMEASL 110


>AM158084-1|CAJ43388.1|  171|Apis mellifera globin 1 protein.
          Length = 171

 Score = 21.8 bits (44), Expect = 9.0
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +1

Query: 373 IRVLNNVPSMPNDPAIMQMSV 435
           I  LNNV    +DP +M+ S+
Sbjct: 90  ITALNNVIDFLHDPGLMEASL 110


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 9.0
 Identities = 17/52 (32%), Positives = 20/52 (38%)
 Frame = +1

Query: 385 NNVPSMPNDPAIMQMSVPPTLGTGPAPGQYVGQFNHPVVGQTPYPQYHPMAG 540
           N  PS PN P          L +    GQ     N  V    PYP  HP++G
Sbjct: 62  NFSPSGPNSPGSFTAGCHSNLLSTSPSGQ-----NKAVA---PYPPNHPLSG 105


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.8 bits (44), Expect = 9.0
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +1

Query: 469 QYVGQFNHPVVGQTPYPQYHP 531
           QY G     +VG++ +  YHP
Sbjct: 329 QYFGYLPQDMVGRSLFDFYHP 349


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 21.8 bits (44), Expect = 9.0
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +1

Query: 469 QYVGQFNHPVVGQTPYPQYHP 531
           QY G     +VG++ +  YHP
Sbjct: 35  QYFGYLPQDMVGRSLFDFYHP 55


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.315    0.131    0.392 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 236,554
Number of Sequences: 438
Number of extensions: 5420
Number of successful extensions: 15
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29871933
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)